Protein–RNA interactions for Protein: O95985

TOP3B, DNA topoisomerase 3-beta-1, humanhuman

Known RBP Predictions only

Length 862 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3BO95985 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
TOP3BO95985 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
TOP3BO95985 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
TOP3BO95985 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC20.58■□□□□ 0.89
TOP3BO95985 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC20.58■□□□□ 0.89
TOP3BO95985 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC20.58■□□□□ 0.89
TOP3BO95985 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC20.58■□□□□ 0.89
TOP3BO95985 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
TOP3BO95985 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC20.58■□□□□ 0.89
TOP3BO95985 MIR4497-201ENST00000583208 89 ntBASIC20.58■□□□□ 0.89
TOP3BO95985 AC061975.6-201ENST00000579045 1553 ntBASIC20.58■□□□□ 0.88
TOP3BO95985 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.88
TOP3BO95985 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
TOP3BO95985 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC20.58■□□□□ 0.88
TOP3BO95985 AL121603.2-201ENST00000557373 2117 ntBASIC20.57■□□□□ 0.88
TOP3BO95985 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC20.57■□□□□ 0.88
TOP3BO95985 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
TOP3BO95985 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
TOP3BO95985 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
TOP3BO95985 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
TOP3BO95985 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC20.57■□□□□ 0.88
TOP3BO95985 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
TOP3BO95985 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC20.57■□□□□ 0.88
TOP3BO95985 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC20.57■□□□□ 0.88
TOP3BO95985 UNC93B5-201ENST00000530315 699 ntBASIC20.57■□□□□ 0.88
TOP3BO95985 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC20.57■□□□□ 0.88
TOP3BO95985 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
TOP3BO95985 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC20.57■□□□□ 0.88
TOP3BO95985 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC20.57■□□□□ 0.88
TOP3BO95985 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC20.57■□□□□ 0.88
TOP3BO95985 AC069236.1-201ENST00000604339 616 ntBASIC20.57■□□□□ 0.88
TOP3BO95985 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC20.57■□□□□ 0.88
TOP3BO95985 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC20.57■□□□□ 0.88
TOP3BO95985 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
TOP3BO95985 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
TOP3BO95985 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
TOP3BO95985 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
TOP3BO95985 OR2A1-AS1-201ENST00000462305 773 ntBASIC20.56■□□□□ 0.88
TOP3BO95985 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC20.56■□□□□ 0.88
TOP3BO95985 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC20.56■□□□□ 0.88
TOP3BO95985 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
TOP3BO95985 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC20.56■□□□□ 0.88
TOP3BO95985 EXOC3-AS1-202ENST00000623673 1663 ntBASIC20.56■□□□□ 0.88
TOP3BO95985 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
TOP3BO95985 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
TOP3BO95985 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
TOP3BO95985 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC20.56■□□□□ 0.88
TOP3BO95985 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC20.56■□□□□ 0.88
TOP3BO95985 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC20.56■□□□□ 0.88
TOP3BO95985 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC20.56■□□□□ 0.88
TOP3BO95985 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
TOP3BO95985 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
TOP3BO95985 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
TOP3BO95985 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
TOP3BO95985 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
TOP3BO95985 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC20.56■□□□□ 0.88
TOP3BO95985 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
TOP3BO95985 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC20.56■□□□□ 0.88
TOP3BO95985 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC20.55■□□□□ 0.88
TOP3BO95985 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
TOP3BO95985 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC20.55■□□□□ 0.88
TOP3BO95985 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
TOP3BO95985 NAA20-201ENST00000310450 920 ntTSL 2 BASIC20.55■□□□□ 0.88
TOP3BO95985 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
TOP3BO95985 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC20.55■□□□□ 0.88
TOP3BO95985 AC007322.4-201ENST00000509611 723 ntBASIC20.55■□□□□ 0.88
TOP3BO95985 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC20.55■□□□□ 0.88
TOP3BO95985 AP003097.1-201ENST00000530657 1135 ntBASIC20.55■□□□□ 0.88
TOP3BO95985 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC20.55■□□□□ 0.88
TOP3BO95985 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
TOP3BO95985 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
TOP3BO95985 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
TOP3BO95985 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TOP3BO95985 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC20.54■□□□□ 0.88
TOP3BO95985 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TOP3BO95985 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
TOP3BO95985 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
TOP3BO95985 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC20.54■□□□□ 0.88
TOP3BO95985 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
TOP3BO95985 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
TOP3BO95985 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TOP3BO95985 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TOP3BO95985 FXN-202ENST00000396364 980 ntTSL 5 BASIC20.54■□□□□ 0.88
TOP3BO95985 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
TOP3BO95985 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC20.54■□□□□ 0.88
TOP3BO95985 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC20.54■□□□□ 0.88
TOP3BO95985 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC20.54■□□□□ 0.88
TOP3BO95985 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC20.54■□□□□ 0.88
TOP3BO95985 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TOP3BO95985 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC20.54■□□□□ 0.88
TOP3BO95985 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
TOP3BO95985 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC20.54■□□□□ 0.88
TOP3BO95985 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC20.54■□□□□ 0.88
TOP3BO95985 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC20.54■□□□□ 0.88
TOP3BO95985 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC20.54■□□□□ 0.88
TOP3BO95985 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC20.53■□□□□ 0.88
TOP3BO95985 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC20.53■□□□□ 0.88
TOP3BO95985 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC20.53■□□□□ 0.88
TOP3BO95985 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
TOP3BO95985 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms