Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SDCBPO00560 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
SDCBPO00560 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC17.06■□□□□ 0.32
SDCBPO00560 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SDCBPO00560 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SDCBPO00560 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SDCBPO00560 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SDCBPO00560 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC17.06■□□□□ 0.32
SDCBPO00560 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC17.06■□□□□ 0.32
SDCBPO00560 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC17.06■□□□□ 0.32
SDCBPO00560 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
SDCBPO00560 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
SDCBPO00560 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC17.06■□□□□ 0.32
SDCBPO00560 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC17.06■□□□□ 0.32
SDCBPO00560 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
SDCBPO00560 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SDCBPO00560 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SDCBPO00560 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
SDCBPO00560 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
SDCBPO00560 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
SDCBPO00560 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC17.06■□□□□ 0.32
SDCBPO00560 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SDCBPO00560 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SDCBPO00560 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SDCBPO00560 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC17.06■□□□□ 0.32
SDCBPO00560 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC17.06■□□□□ 0.32
SDCBPO00560 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SDCBPO00560 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SDCBPO00560 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SDCBPO00560 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
SDCBPO00560 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SDCBPO00560 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC17.05■□□□□ 0.32
SDCBPO00560 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SDCBPO00560 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SDCBPO00560 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC17.05■□□□□ 0.32
SDCBPO00560 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC17.05■□□□□ 0.32
SDCBPO00560 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SDCBPO00560 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
SDCBPO00560 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC17.05■□□□□ 0.32
SDCBPO00560 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
SDCBPO00560 SLC7A5P2-201ENST00000553010 536 ntBASIC17.05■□□□□ 0.32
SDCBPO00560 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SDCBPO00560 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
SDCBPO00560 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
SDCBPO00560 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
SDCBPO00560 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC17.05■□□□□ 0.32
SDCBPO00560 AC098818.2-201ENST00000564925 2320 ntBASIC17.05■□□□□ 0.32
SDCBPO00560 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SDCBPO00560 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SDCBPO00560 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SDCBPO00560 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC17.05■□□□□ 0.32
SDCBPO00560 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC17.05■□□□□ 0.32
SDCBPO00560 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC17.05■□□□□ 0.32
SDCBPO00560 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC17.05■□□□□ 0.32
SDCBPO00560 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
SDCBPO00560 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SDCBPO00560 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SDCBPO00560 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
SDCBPO00560 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SDCBPO00560 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SDCBPO00560 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC17.04■□□□□ 0.32
SDCBPO00560 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
SDCBPO00560 AC018445.3-201ENST00000624177 1945 ntBASIC17.04■□□□□ 0.32
SDCBPO00560 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
SDCBPO00560 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
SDCBPO00560 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC17.04■□□□□ 0.32
SDCBPO00560 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SDCBPO00560 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SDCBPO00560 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC17.04■□□□□ 0.32
SDCBPO00560 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SDCBPO00560 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SDCBPO00560 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SDCBPO00560 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC17.04■□□□□ 0.32
SDCBPO00560 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
SDCBPO00560 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SDCBPO00560 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
SDCBPO00560 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
SDCBPO00560 KRT19P1-201ENST00000405746 1186 ntBASIC17.04■□□□□ 0.32
SDCBPO00560 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
SDCBPO00560 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC17.04■□□□□ 0.32
SDCBPO00560 KRT18P20-201ENST00000548986 1279 ntBASIC17.04■□□□□ 0.32
SDCBPO00560 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC17.04■□□□□ 0.32
SDCBPO00560 GALNS-213ENST00000569433 723 ntTSL 3 BASIC17.04■□□□□ 0.32
SDCBPO00560 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
SDCBPO00560 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC17.04■□□□□ 0.32
SDCBPO00560 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC17.04■□□□□ 0.32
SDCBPO00560 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
SDCBPO00560 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC17.04■□□□□ 0.32
SDCBPO00560 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SDCBPO00560 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC17.04■□□□□ 0.32
SDCBPO00560 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
SDCBPO00560 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC17.04■□□□□ 0.32
SDCBPO00560 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC17.04■□□□□ 0.32
SDCBPO00560 AC120498.9-201ENST00000339021 3867 ntBASIC17.04■□□□□ 0.32
SDCBPO00560 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC17.04■□□□□ 0.32
SDCBPO00560 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
SDCBPO00560 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SDCBPO00560 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
SDCBPO00560 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
SDCBPO00560 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC17.03■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 39.2 ms