Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 AP000446.1-201ENST00000530045 2643 ntTSL 1 (best) BASIC8.34□□□□□ -1.07
MSX1P28360 SLC11A2-212ENST00000547688 2401 ntAPPRIS ALT2 TSL 5 BASIC8.34□□□□□ -1.07
MSX1P28360 COL6A6-201ENST00000358511 9581 ntAPPRIS P1 TSL 5 BASIC8.34□□□□□ -1.07
MSX1P28360 ERVMER34-1-202ENST00000443173 3830 ntAPPRIS P1 TSL 3 BASIC8.34□□□□□ -1.07
MSX1P28360 MID1-201ENST00000317552 6463 ntAPPRIS P1 TSL 1 (best) BASIC8.34□□□□□ -1.07
MSX1P28360 C11orf45-201ENST00000310799 3624 ntAPPRIS P1 TSL 1 (best) BASIC8.34□□□□□ -1.07
MSX1P28360 OPCML-203ENST00000524381 6424 ntTSL 1 (best) BASIC8.34□□□□□ -1.07
MSX1P28360 AC006042.3-201ENST00000454684 1469 ntBASIC8.34□□□□□ -1.07
MSX1P28360 NEDD1-203ENST00000429527 3366 ntAPPRIS P1 TSL 1 (best) BASIC8.34□□□□□ -1.07
MSX1P28360 IGSF1-205ENST00000370904 5413 ntAPPRIS ALT2 TSL 2 BASIC8.34□□□□□ -1.07
MSX1P28360 UGT2B7-203ENST00000508661 1633 ntTSL 2 BASIC8.34□□□□□ -1.07
MSX1P28360 ATF7IP-221ENST00000543189 4887 ntAPPRIS ALT2 TSL 1 (best) BASIC8.34□□□□□ -1.07
MSX1P28360 C11orf57-201ENST00000280352 3693 ntAPPRIS ALT1 TSL 2 BASIC8.34□□□□□ -1.07
MSX1P28360 OR8I2-201ENST00000302124 1010 ntAPPRIS P1 BASIC8.34□□□□□ -1.07
MSX1P28360 OR5K1-201ENST00000332650 1097 ntAPPRIS P1 BASIC8.34□□□□□ -1.07
MSX1P28360 AZI2-202ENST00000334100 943 ntTSL 3 BASIC8.34□□□□□ -1.07
MSX1P28360 RNA5SP452-201ENST00000363004 119 ntBASIC8.34□□□□□ -1.07
MSX1P28360 INIP-201ENST00000374234 713 ntTSL 2 BASIC8.34□□□□□ -1.07
MSX1P28360 G6PC2-202ENST00000375363 1214 ntAPPRIS P1 TSL 1 (best) BASIC8.34□□□□□ -1.07
MSX1P28360 DYNLT3-202ENST00000378581 920 ntTSL 2 BASIC8.34□□□□□ -1.07
MSX1P28360 DNASE1L3-201ENST00000394549 1294 ntAPPRIS P3 TSL 1 (best) BASIC8.34□□□□□ -1.07
MSX1P28360 LEUTX-201ENST00000396841 671 ntTSL 2 BASIC8.34□□□□□ -1.07
MSX1P28360 SLC8A1-204ENST00000405269 2965 ntTSL 5 BASIC8.34□□□□□ -1.07
MSX1P28360 TUBB4BP7-201ENST00000406999 1234 ntBASIC8.34□□□□□ -1.07
MSX1P28360 AL590084.1-201ENST00000407885 387 ntBASIC8.34□□□□□ -1.07
MSX1P28360 MIR1306-201ENST00000408439 85 ntBASIC8.34□□□□□ -1.07
MSX1P28360 SETP22-201ENST00000412243 957 ntBASIC8.34□□□□□ -1.07
MSX1P28360 MAGEB6P1-201ENST00000416929 1224 ntAPPRIS P1 BASIC8.34□□□□□ -1.07
MSX1P28360 MIATNB-201ENST00000417083 706 ntTSL 3 BASIC8.34□□□□□ -1.07
MSX1P28360 OR8B9P-201ENST00000419756 925 ntBASIC8.34□□□□□ -1.07
MSX1P28360 AL049610.1-201ENST00000423374 372 ntBASIC8.34□□□□□ -1.07
MSX1P28360 AC012519.1-201ENST00000424588 610 ntBASIC8.34□□□□□ -1.07
MSX1P28360 AL669841.1-201ENST00000425723 558 ntTSL 2 BASIC8.34□□□□□ -1.07
MSX1P28360 AC092646.1-201ENST00000427142 901 ntBASIC8.34□□□□□ -1.07
MSX1P28360 MGAT2P2-201ENST00000427194 797 ntBASIC8.34□□□□□ -1.07
MSX1P28360 AL604028.1-201ENST00000430643 598 ntTSL 2 BASIC8.34□□□□□ -1.07
MSX1P28360 AC092839.2-201ENST00000431130 377 ntTSL 3 BASIC8.34□□□□□ -1.07
MSX1P28360 HNRNPA1P57-201ENST00000431359 530 ntTSL 4 BASIC8.34□□□□□ -1.07
MSX1P28360 AC007179.2-206ENST00000434611 467 ntTSL 3 BASIC8.34□□□□□ -1.07
MSX1P28360 LLPHP2-201ENST00000436405 396 ntBASIC8.34□□□□□ -1.07
MSX1P28360 AL603839.2-201ENST00000437060 546 ntTSL 5 BASIC8.34□□□□□ -1.07
MSX1P28360 Z99127.2-201ENST00000441426 334 ntBASIC8.34□□□□□ -1.07
MSX1P28360 AC139712.3-201ENST00000443926 639 ntTSL 2 BASIC8.34□□□□□ -1.07
MSX1P28360 AL513422.1-201ENST00000449531 383 ntTSL 2 BASIC8.34□□□□□ -1.07
MSX1P28360 AL096803.2-201ENST00000450032 677 ntBASIC8.34□□□□□ -1.07
MSX1P28360 AL392046.1-201ENST00000450742 569 ntTSL 5 BASIC8.34□□□□□ -1.07
MSX1P28360 FDX1P2-201ENST00000450769 375 ntBASIC8.34□□□□□ -1.07
MSX1P28360 AL078599.2-201ENST00000457116 471 ntTSL 3 BASIC8.34□□□□□ -1.07
MSX1P28360 LINC01053-201ENST00000457628 771 ntTSL 2 BASIC8.34□□□□□ -1.07
MSX1P28360 RN7SL337P-201ENST00000462468 301 ntBASIC8.34□□□□□ -1.07
MSX1P28360 RN7SL104P-201ENST00000498686 293 ntBASIC8.34□□□□□ -1.07
MSX1P28360 C4orf33-204ENST00000502887 1126 ntTSL 1 (best) BASIC8.34□□□□□ -1.07
MSX1P28360 FGB-207ENST00000509493 1164 ntTSL 5 BASIC8.34□□□□□ -1.07
MSX1P28360 AC068790.1-201ENST00000536166 355 ntBASIC8.34□□□□□ -1.07
MSX1P28360 AC005000.1-201ENST00000536192 288 ntBASIC8.34□□□□□ -1.07
MSX1P28360 NR1H4-204ENST00000546380 565 ntTSL 3 BASIC8.34□□□□□ -1.07
MSX1P28360 PCED1B-AS1-206ENST00000550426 683 ntTSL 5 BASIC8.34□□□□□ -1.07
MSX1P28360 AC090502.3-201ENST00000552046 529 ntTSL 3 BASIC8.34□□□□□ -1.07
MSX1P28360 PCED1B-AS1-211ENST00000552990 654 ntTSL 3 BASIC8.34□□□□□ -1.07
MSX1P28360 NBEAP1-201ENST00000554452 979 ntBASIC8.34□□□□□ -1.07
MSX1P28360 AL355773.1-201ENST00000554458 459 ntTSL 3 BASIC8.34□□□□□ -1.07
MSX1P28360 AC116348.1-201ENST00000562525 528 ntTSL 3 BASIC8.34□□□□□ -1.07
MSX1P28360 AC007614.1-201ENST00000566607 309 ntTSL 3 BASIC8.34□□□□□ -1.07
MSX1P28360 LINC02178-201ENST00000566876 425 ntTSL 3 BASIC8.34□□□□□ -1.07
MSX1P28360 AC007346.1-201ENST00000569208 867 ntBASIC8.34□□□□□ -1.07
MSX1P28360 AC118754.2-201ENST00000574133 537 ntTSL 4 BASIC8.34□□□□□ -1.07
MSX1P28360 VN1R83P-201ENST00000595685 445 ntBASIC8.34□□□□□ -1.07
MSX1P28360 MTCYBP22-201ENST00000603788 447 ntBASIC8.34□□□□□ -1.07
MSX1P28360 HSPE1-MOB4-201ENST00000604458 890 ntAPPRIS P1 TSL 3 BASIC8.34□□□□□ -1.07
MSX1P28360 AL356458.1-201ENST00000604764 465 ntBASIC8.34□□□□□ -1.07
MSX1P28360 PRSS3P3-202ENST00000618042 682 ntBASIC8.34□□□□□ -1.07
MSX1P28360 AC010435.1-201ENST00000623353 1177 ntBASIC8.34□□□□□ -1.07
MSX1P28360 FGL2-202ENST00000637771 989 ntBASIC8.34□□□□□ -1.07
MSX1P28360 AC247036.7-201ENST00000639643 304 ntBASIC8.34□□□□□ -1.07
MSX1P28360 SLFN13-204ENST00000526861 6004 ntAPPRIS P1 TSL 5 BASIC8.34□□□□□ -1.07
MSX1P28360 AC079466.1-201ENST00000587961 4453 ntTSL 2 BASIC8.34□□□□□ -1.07
MSX1P28360 ICK-201ENST00000350082 6116 ntAPPRIS P1 TSL 1 (best) BASIC8.34□□□□□ -1.07
MSX1P28360 NNT-208ENST00000512996 4288 ntTSL 5 BASIC8.34□□□□□ -1.07
MSX1P28360 ABCA1-202ENST00000374736 10494 ntAPPRIS P1 TSL 1 (best) BASIC8.34□□□□□ -1.07
MSX1P28360 NIPA1-202ENST00000437912 7613 ntAPPRIS ALT2 TSL 1 (best) BASIC8.34□□□□□ -1.07
MSX1P28360 PART1-202ENST00000506884 2068 ntTSL 2 BASIC8.34□□□□□ -1.07
MSX1P28360 LCP2-206ENST00000521416 1599 ntTSL 2 BASIC8.34□□□□□ -1.07
MSX1P28360 RAD21-201ENST00000297338 3749 ntAPPRIS P1 TSL 1 (best) BASIC8.34□□□□□ -1.07
MSX1P28360 PGR-202ENST00000325455 13748 ntAPPRIS P1 TSL 1 (best) BASIC8.34□□□□□ -1.07
MSX1P28360 MLH1-222ENST00000539477 2366 ntTSL 2 BASIC8.34□□□□□ -1.07
MSX1P28360 PTPRM-202ENST00000400053 5292 ntAPPRIS ALT2 TSL 5 BASIC8.34□□□□□ -1.07
MSX1P28360 LINC02028-202ENST00000432154 2666 ntTSL 1 (best) BASIC8.34□□□□□ -1.07
MSX1P28360 LMO7-218ENST00000526202 4121 ntTSL 2 BASIC8.34□□□□□ -1.07
MSX1P28360 PNMA8C-201ENST00000617053 4255 ntAPPRIS P1 BASIC8.34□□□□□ -1.07
MSX1P28360 UGT2B28-202ENST00000511240 1525 ntTSL 1 (best) BASIC8.34□□□□□ -1.08
MSX1P28360 KDM2B-206ENST00000538046 2301 ntTSL 1 (best) BASIC8.34□□□□□ -1.08
MSX1P28360 ZEB2-201ENST00000303660 3913 ntAPPRIS ALT1 TSL 1 (best) BASIC8.34□□□□□ -1.08
MSX1P28360 AC114689.1-201ENST00000578727 2484 ntBASIC8.34□□□□□ -1.08
MSX1P28360 EIF5B-201ENST00000289371 5777 ntAPPRIS P2 TSL 1 (best) BASIC8.33□□□□□ -1.08
MSX1P28360 BCLAF3-203ENST00000379687 6528 ntAPPRIS P2 TSL 5 BASIC8.33□□□□□ -1.08
MSX1P28360 ISX-201ENST00000308700 3384 ntAPPRIS P1 TSL 1 (best) BASIC8.33□□□□□ -1.08
MSX1P28360 ZNF649-207ENST00000600738 2283 ntTSL 1 (best) BASIC8.33□□□□□ -1.08
MSX1P28360 ARMCX5-206ENST00000604957 4640 ntAPPRIS P1 BASIC8.33□□□□□ -1.08
MSX1P28360 CNIH4-202ENST00000366857 3963 ntTSL 1 (best) BASIC8.33□□□□□ -1.08
MSX1P28360 PCBP2-222ENST00000552296 1342 ntAPPRIS ALT1 TSL 5 BASIC8.33□□□□□ -1.08
Retrieved 100 of 98,524 protein–RNA pairs in 79.3 ms