Protein–RNA interactions for Protein: Q9UPQ4

TRIM35, Tripartite motif-containing protein 35, humanhuman

Predictions only

Length 493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM35Q9UPQ4 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC26.34■■□□□ 1.81
TRIM35Q9UPQ4 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
TRIM35Q9UPQ4 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
TRIM35Q9UPQ4 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC26.34■■□□□ 1.81
TRIM35Q9UPQ4 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
TRIM35Q9UPQ4 LINC01006-201ENST00000333319 2292 ntBASIC26.34■■□□□ 1.81
TRIM35Q9UPQ4 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
TRIM35Q9UPQ4 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
TRIM35Q9UPQ4 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
TRIM35Q9UPQ4 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
TRIM35Q9UPQ4 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC26.33■■□□□ 1.81
TRIM35Q9UPQ4 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
TRIM35Q9UPQ4 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
TRIM35Q9UPQ4 GGT1-206ENST00000404223 952 ntTSL 2 BASIC26.33■■□□□ 1.81
TRIM35Q9UPQ4 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
TRIM35Q9UPQ4 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
TRIM35Q9UPQ4 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC26.33■■□□□ 1.81
TRIM35Q9UPQ4 SOX15-203ENST00000570788 1093 ntBASIC26.33■■□□□ 1.81
TRIM35Q9UPQ4 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
TRIM35Q9UPQ4 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
TRIM35Q9UPQ4 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
TRIM35Q9UPQ4 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC26.33■■□□□ 1.81
TRIM35Q9UPQ4 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
TRIM35Q9UPQ4 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC26.33■■□□□ 1.81
TRIM35Q9UPQ4 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC26.33■■□□□ 1.81
TRIM35Q9UPQ4 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC26.33■■□□□ 1.81
TRIM35Q9UPQ4 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC26.33■■□□□ 1.81
TRIM35Q9UPQ4 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC26.33■■□□□ 1.81
TRIM35Q9UPQ4 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC26.33■■□□□ 1.81
TRIM35Q9UPQ4 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC26.32■■□□□ 1.8
TRIM35Q9UPQ4 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
TRIM35Q9UPQ4 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
TRIM35Q9UPQ4 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC26.32■■□□□ 1.8
TRIM35Q9UPQ4 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
TRIM35Q9UPQ4 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
TRIM35Q9UPQ4 ESRRAP1-201ENST00000400596 1257 ntBASIC26.32■■□□□ 1.8
TRIM35Q9UPQ4 POU5F1P3-201ENST00000428824 1078 ntBASIC26.32■■□□□ 1.8
TRIM35Q9UPQ4 AC026366.1-201ENST00000488803 879 ntBASIC26.32■■□□□ 1.8
TRIM35Q9UPQ4 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC26.32■■□□□ 1.8
TRIM35Q9UPQ4 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
TRIM35Q9UPQ4 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC26.32■■□□□ 1.8
TRIM35Q9UPQ4 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC26.32■■□□□ 1.8
TRIM35Q9UPQ4 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
TRIM35Q9UPQ4 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC26.32■■□□□ 1.8
TRIM35Q9UPQ4 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
TRIM35Q9UPQ4 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC26.31■■□□□ 1.8
TRIM35Q9UPQ4 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
TRIM35Q9UPQ4 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC26.31■■□□□ 1.8
TRIM35Q9UPQ4 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC26.31■■□□□ 1.8
TRIM35Q9UPQ4 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC26.31■■□□□ 1.8
TRIM35Q9UPQ4 OR2A1-AS1-207ENST00000486094 819 ntBASIC26.31■■□□□ 1.8
TRIM35Q9UPQ4 AP003097.1-201ENST00000530657 1135 ntBASIC26.31■■□□□ 1.8
TRIM35Q9UPQ4 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC26.31■■□□□ 1.8
TRIM35Q9UPQ4 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC26.31■■□□□ 1.8
TRIM35Q9UPQ4 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC26.31■■□□□ 1.8
TRIM35Q9UPQ4 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC26.31■■□□□ 1.8
TRIM35Q9UPQ4 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC26.31■■□□□ 1.8
TRIM35Q9UPQ4 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
TRIM35Q9UPQ4 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC26.3■■□□□ 1.8
TRIM35Q9UPQ4 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
TRIM35Q9UPQ4 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC26.3■■□□□ 1.8
TRIM35Q9UPQ4 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
TRIM35Q9UPQ4 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC26.3■■□□□ 1.8
TRIM35Q9UPQ4 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
TRIM35Q9UPQ4 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC26.3■■□□□ 1.8
TRIM35Q9UPQ4 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
TRIM35Q9UPQ4 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC26.3■■□□□ 1.8
TRIM35Q9UPQ4 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
TRIM35Q9UPQ4 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
TRIM35Q9UPQ4 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC26.29■■□□□ 1.8
TRIM35Q9UPQ4 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC26.29■■□□□ 1.8
TRIM35Q9UPQ4 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
TRIM35Q9UPQ4 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC26.29■■□□□ 1.8
TRIM35Q9UPQ4 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC26.29■■□□□ 1.8
TRIM35Q9UPQ4 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC26.29■■□□□ 1.8
TRIM35Q9UPQ4 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
TRIM35Q9UPQ4 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC26.29■■□□□ 1.8
TRIM35Q9UPQ4 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC26.29■■□□□ 1.8
TRIM35Q9UPQ4 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC26.29■■□□□ 1.8
TRIM35Q9UPQ4 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
TRIM35Q9UPQ4 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC26.29■■□□□ 1.8
TRIM35Q9UPQ4 KRT8P17-201ENST00000453110 1448 ntBASIC26.29■■□□□ 1.8
TRIM35Q9UPQ4 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
TRIM35Q9UPQ4 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC26.28■■□□□ 1.8
TRIM35Q9UPQ4 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
TRIM35Q9UPQ4 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC26.28■■□□□ 1.8
TRIM35Q9UPQ4 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC26.28■■□□□ 1.8
TRIM35Q9UPQ4 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC26.28■■□□□ 1.8
TRIM35Q9UPQ4 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC26.28■■□□□ 1.8
TRIM35Q9UPQ4 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC26.28■■□□□ 1.8
TRIM35Q9UPQ4 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC26.28■■□□□ 1.8
TRIM35Q9UPQ4 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC26.28■■□□□ 1.8
TRIM35Q9UPQ4 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC26.28■■□□□ 1.8
TRIM35Q9UPQ4 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC26.28■■□□□ 1.8
TRIM35Q9UPQ4 AL031963.3-201ENST00000606441 850 ntBASIC26.28■■□□□ 1.8
TRIM35Q9UPQ4 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC26.28■■□□□ 1.8
TRIM35Q9UPQ4 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC26.28■■□□□ 1.8
TRIM35Q9UPQ4 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
TRIM35Q9UPQ4 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC26.27■■□□□ 1.8
TRIM35Q9UPQ4 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC26.27■■□□□ 1.8
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms