Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC30.83■■■□□ 2.53
COL17A1Q9UMD9 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC30.83■■■□□ 2.53
COL17A1Q9UMD9 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC30.83■■■□□ 2.53
COL17A1Q9UMD9 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC30.83■■■□□ 2.53
COL17A1Q9UMD9 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC30.83■■■□□ 2.53
COL17A1Q9UMD9 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC30.82■■■□□ 2.53
COL17A1Q9UMD9 AC128688.1-201ENST00000487626 519 ntBASIC30.82■■■□□ 2.53
COL17A1Q9UMD9 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC30.82■■■□□ 2.52
COL17A1Q9UMD9 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC30.82■■■□□ 2.52
COL17A1Q9UMD9 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC30.82■■■□□ 2.52
COL17A1Q9UMD9 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC30.82■■■□□ 2.52
COL17A1Q9UMD9 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC30.82■■■□□ 2.52
COL17A1Q9UMD9 PGM5P4-201ENST00000421970 445 ntBASIC30.82■■■□□ 2.52
COL17A1Q9UMD9 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC30.82■■■□□ 2.52
COL17A1Q9UMD9 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC30.82■■■□□ 2.52
COL17A1Q9UMD9 AL121906.2-201ENST00000621597 723 ntBASIC30.82■■■□□ 2.52
COL17A1Q9UMD9 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC30.81■■■□□ 2.52
COL17A1Q9UMD9 AC010542.4-201ENST00000563151 1910 ntBASIC30.81■■■□□ 2.52
COL17A1Q9UMD9 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC30.81■■■□□ 2.52
COL17A1Q9UMD9 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC30.81■■■□□ 2.52
COL17A1Q9UMD9 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC30.81■■■□□ 2.52
COL17A1Q9UMD9 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC30.81■■■□□ 2.52
COL17A1Q9UMD9 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC30.81■■■□□ 2.52
COL17A1Q9UMD9 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC30.81■■■□□ 2.52
COL17A1Q9UMD9 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC30.81■■■□□ 2.52
COL17A1Q9UMD9 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC30.81■■■□□ 2.52
COL17A1Q9UMD9 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC30.81■■■□□ 2.52
COL17A1Q9UMD9 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC30.81■■■□□ 2.52
COL17A1Q9UMD9 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC30.8■■■□□ 2.52
COL17A1Q9UMD9 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC30.8■■■□□ 2.52
COL17A1Q9UMD9 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC30.8■■■□□ 2.52
COL17A1Q9UMD9 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC30.8■■■□□ 2.52
COL17A1Q9UMD9 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC30.8■■■□□ 2.52
COL17A1Q9UMD9 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC30.8■■■□□ 2.52
COL17A1Q9UMD9 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC30.8■■■□□ 2.52
COL17A1Q9UMD9 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC30.8■■■□□ 2.52
COL17A1Q9UMD9 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC30.8■■■□□ 2.52
COL17A1Q9UMD9 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC30.8■■■□□ 2.52
COL17A1Q9UMD9 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC30.8■■■□□ 2.52
COL17A1Q9UMD9 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC30.8■■■□□ 2.52
COL17A1Q9UMD9 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC30.8■■■□□ 2.52
COL17A1Q9UMD9 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC30.8■■■□□ 2.52
COL17A1Q9UMD9 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC30.8■■■□□ 2.52
COL17A1Q9UMD9 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC30.8■■■□□ 2.52
COL17A1Q9UMD9 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC30.8■■■□□ 2.52
COL17A1Q9UMD9 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC30.8■■■□□ 2.52
COL17A1Q9UMD9 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC30.8■■■□□ 2.52
COL17A1Q9UMD9 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC30.8■■■□□ 2.52
COL17A1Q9UMD9 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC30.8■■■□□ 2.52
COL17A1Q9UMD9 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC30.79■■■□□ 2.52
COL17A1Q9UMD9 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC30.79■■■□□ 2.52
COL17A1Q9UMD9 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC30.79■■■□□ 2.52
COL17A1Q9UMD9 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC30.79■■■□□ 2.52
COL17A1Q9UMD9 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC30.79■■■□□ 2.52
COL17A1Q9UMD9 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC30.79■■■□□ 2.52
COL17A1Q9UMD9 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC30.79■■■□□ 2.52
COL17A1Q9UMD9 AC116407.4-201ENST00000623319 1061 ntBASIC30.79■■■□□ 2.52
COL17A1Q9UMD9 ABBA01031674.1-201ENST00000635145 728 ntBASIC30.79■■■□□ 2.52
COL17A1Q9UMD9 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC30.79■■■□□ 2.52
COL17A1Q9UMD9 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC30.79■■■□□ 2.52
COL17A1Q9UMD9 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC30.79■■■□□ 2.52
COL17A1Q9UMD9 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC30.79■■■□□ 2.52
COL17A1Q9UMD9 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC30.79■■■□□ 2.52
COL17A1Q9UMD9 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC30.78■■■□□ 2.52
COL17A1Q9UMD9 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC30.78■■■□□ 2.52
COL17A1Q9UMD9 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC30.78■■■□□ 2.52
COL17A1Q9UMD9 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC30.78■■■□□ 2.52
COL17A1Q9UMD9 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC30.78■■■□□ 2.52
COL17A1Q9UMD9 FAM207BP-201ENST00000447172 505 ntBASIC30.78■■■□□ 2.52
COL17A1Q9UMD9 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC30.78■■■□□ 2.52
COL17A1Q9UMD9 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC30.78■■■□□ 2.52
COL17A1Q9UMD9 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC30.78■■■□□ 2.52
COL17A1Q9UMD9 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC30.78■■■□□ 2.52
COL17A1Q9UMD9 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC30.77■■■□□ 2.52
COL17A1Q9UMD9 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC30.77■■■□□ 2.52
COL17A1Q9UMD9 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC30.77■■■□□ 2.52
COL17A1Q9UMD9 FDX1P1-201ENST00000449115 551 ntBASIC30.77■■■□□ 2.52
COL17A1Q9UMD9 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC30.77■■■□□ 2.52
COL17A1Q9UMD9 CD81-212ENST00000526072 1172 ntTSL 5 BASIC30.77■■■□□ 2.52
COL17A1Q9UMD9 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC30.77■■■□□ 2.52
COL17A1Q9UMD9 IRF5-214ENST00000613821 595 ntTSL 5 BASIC30.77■■■□□ 2.52
COL17A1Q9UMD9 AC023511.2-201ENST00000618803 211 ntBASIC30.77■■■□□ 2.52
COL17A1Q9UMD9 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC30.77■■■□□ 2.52
COL17A1Q9UMD9 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC30.77■■■□□ 2.52
COL17A1Q9UMD9 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC30.77■■■□□ 2.52
COL17A1Q9UMD9 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC30.77■■■□□ 2.52
COL17A1Q9UMD9 GCA-201ENST00000233612 1694 ntTSL 2 BASIC30.77■■■□□ 2.52
COL17A1Q9UMD9 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC30.77■■■□□ 2.52
COL17A1Q9UMD9 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC30.77■■■□□ 2.52
COL17A1Q9UMD9 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC30.76■■■□□ 2.52
COL17A1Q9UMD9 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC30.76■■■□□ 2.52
COL17A1Q9UMD9 TSPY5P-201ENST00000426936 936 ntBASIC30.76■■■□□ 2.52
COL17A1Q9UMD9 AC006538.3-201ENST00000612495 578 ntBASIC30.76■■■□□ 2.52
COL17A1Q9UMD9 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC30.76■■■□□ 2.52
COL17A1Q9UMD9 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC30.76■■■□□ 2.52
COL17A1Q9UMD9 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC30.76■■■□□ 2.52
COL17A1Q9UMD9 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC30.76■■■□□ 2.51
COL17A1Q9UMD9 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC30.76■■■□□ 2.51
COL17A1Q9UMD9 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC30.76■■■□□ 2.51
COL17A1Q9UMD9 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC30.76■■■□□ 2.51
Retrieved 100 of 98,524 protein–RNA pairs in 53.8 ms