Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC19.13■□□□□ 0.65
SCN3AQ9NY46 AC092720.2-201ENST00000602388 1665 ntBASIC19.13■□□□□ 0.65
SCN3AQ9NY46 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC19.13■□□□□ 0.65
SCN3AQ9NY46 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SCN3AQ9NY46 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
SCN3AQ9NY46 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
SCN3AQ9NY46 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
SCN3AQ9NY46 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
SCN3AQ9NY46 AC112907.3-201ENST00000577781 2400 ntBASIC19.12■□□□□ 0.65
SCN3AQ9NY46 AL512408.1-201ENST00000569378 2000 ntBASIC19.12■□□□□ 0.65
SCN3AQ9NY46 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
SCN3AQ9NY46 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
SCN3AQ9NY46 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC19.12■□□□□ 0.65
SCN3AQ9NY46 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC19.12■□□□□ 0.65
SCN3AQ9NY46 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SCN3AQ9NY46 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
SCN3AQ9NY46 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC19.12■□□□□ 0.65
SCN3AQ9NY46 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC19.12■□□□□ 0.65
SCN3AQ9NY46 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SCN3AQ9NY46 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
SCN3AQ9NY46 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC19.12■□□□□ 0.65
SCN3AQ9NY46 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SCN3AQ9NY46 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC19.12■□□□□ 0.65
SCN3AQ9NY46 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SCN3AQ9NY46 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
SCN3AQ9NY46 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
SCN3AQ9NY46 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC19.12■□□□□ 0.65
SCN3AQ9NY46 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC19.12■□□□□ 0.65
SCN3AQ9NY46 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SCN3AQ9NY46 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC19.12■□□□□ 0.65
SCN3AQ9NY46 KLF2-202ENST00000592003 564 ntTSL 3 BASIC19.12■□□□□ 0.65
SCN3AQ9NY46 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
SCN3AQ9NY46 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
SCN3AQ9NY46 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
SCN3AQ9NY46 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SCN3AQ9NY46 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SCN3AQ9NY46 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
SCN3AQ9NY46 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC19.11■□□□□ 0.65
SCN3AQ9NY46 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
SCN3AQ9NY46 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC19.11■□□□□ 0.65
SCN3AQ9NY46 BET1L-207ENST00000529614 560 ntTSL 5 BASIC19.11■□□□□ 0.65
SCN3AQ9NY46 REXO2-208ENST00000539754 791 ntTSL 2 BASIC19.11■□□□□ 0.65
SCN3AQ9NY46 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
SCN3AQ9NY46 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
SCN3AQ9NY46 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SCN3AQ9NY46 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SCN3AQ9NY46 DPP3P2-201ENST00000416030 1696 ntBASIC19.11■□□□□ 0.65
SCN3AQ9NY46 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
SCN3AQ9NY46 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SCN3AQ9NY46 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SCN3AQ9NY46 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
SCN3AQ9NY46 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC19.1■□□□□ 0.65
SCN3AQ9NY46 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC19.1■□□□□ 0.65
SCN3AQ9NY46 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SCN3AQ9NY46 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
SCN3AQ9NY46 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
SCN3AQ9NY46 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
SCN3AQ9NY46 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
SCN3AQ9NY46 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC19.1■□□□□ 0.65
SCN3AQ9NY46 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SCN3AQ9NY46 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC19.1■□□□□ 0.65
SCN3AQ9NY46 AC092368.3-202ENST00000574180 1591 ntBASIC19.1■□□□□ 0.65
SCN3AQ9NY46 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SCN3AQ9NY46 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SCN3AQ9NY46 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC19.1■□□□□ 0.65
SCN3AQ9NY46 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC19.1■□□□□ 0.65
SCN3AQ9NY46 AC008403.3-201ENST00000598924 454 ntBASIC19.1■□□□□ 0.65
SCN3AQ9NY46 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SCN3AQ9NY46 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC19.09■□□□□ 0.65
SCN3AQ9NY46 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
SCN3AQ9NY46 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC19.09■□□□□ 0.65
SCN3AQ9NY46 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SCN3AQ9NY46 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC19.09■□□□□ 0.65
SCN3AQ9NY46 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC19.09■□□□□ 0.65
SCN3AQ9NY46 GAS7-202ENST00000396115 929 ntTSL 5 BASIC19.09■□□□□ 0.65
SCN3AQ9NY46 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC19.09■□□□□ 0.65
SCN3AQ9NY46 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
SCN3AQ9NY46 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SCN3AQ9NY46 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
SCN3AQ9NY46 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
SCN3AQ9NY46 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC19.09■□□□□ 0.65
SCN3AQ9NY46 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
SCN3AQ9NY46 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC19.09■□□□□ 0.65
SCN3AQ9NY46 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
SCN3AQ9NY46 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC19.09■□□□□ 0.65
SCN3AQ9NY46 GABARAPL3-202ENST00000624044 1851 ntBASIC19.09■□□□□ 0.65
SCN3AQ9NY46 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SCN3AQ9NY46 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC19.09■□□□□ 0.65
SCN3AQ9NY46 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SCN3AQ9NY46 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
SCN3AQ9NY46 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC19.08■□□□□ 0.65
SCN3AQ9NY46 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC19.08■□□□□ 0.65
SCN3AQ9NY46 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
SCN3AQ9NY46 HES2-206ENST00000489730 730 ntTSL 2 BASIC19.08■□□□□ 0.65
SCN3AQ9NY46 CD99P1-205ENST00000527459 561 ntBASIC19.08■□□□□ 0.65
SCN3AQ9NY46 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC19.08■□□□□ 0.65
SCN3AQ9NY46 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC19.08■□□□□ 0.65
SCN3AQ9NY46 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC19.08■□□□□ 0.65
SCN3AQ9NY46 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC19.08■□□□□ 0.65
SCN3AQ9NY46 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms