Protein–RNA interactions for Protein: Q9NWM3

CUEDC1, CUE domain-containing protein 1, humanhuman

Predicted RBP Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUEDC1Q9NWM3 DUSP5P2-201ENST00000426873 1033 ntBASIC19.5■□□□□ 0.71
CUEDC1Q9NWM3 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC19.5■□□□□ 0.71
CUEDC1Q9NWM3 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
CUEDC1Q9NWM3 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
CUEDC1Q9NWM3 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
CUEDC1Q9NWM3 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CUEDC1Q9NWM3 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
CUEDC1Q9NWM3 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC19.5■□□□□ 0.71
CUEDC1Q9NWM3 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC19.5■□□□□ 0.71
CUEDC1Q9NWM3 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
CUEDC1Q9NWM3 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
CUEDC1Q9NWM3 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
CUEDC1Q9NWM3 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CUEDC1Q9NWM3 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC19.49■□□□□ 0.71
CUEDC1Q9NWM3 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CUEDC1Q9NWM3 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
CUEDC1Q9NWM3 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CUEDC1Q9NWM3 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CUEDC1Q9NWM3 MIR4758-201ENST00000577688 71 ntBASIC19.49■□□□□ 0.71
CUEDC1Q9NWM3 AP006294.2-201ENST00000641667 209 ntBASIC19.49■□□□□ 0.71
CUEDC1Q9NWM3 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CUEDC1Q9NWM3 DET1-207ENST00000564406 2315 ntTSL 2 BASIC19.49■□□□□ 0.71
CUEDC1Q9NWM3 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
CUEDC1Q9NWM3 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC19.49■□□□□ 0.71
CUEDC1Q9NWM3 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
CUEDC1Q9NWM3 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CUEDC1Q9NWM3 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CUEDC1Q9NWM3 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC19.49■□□□□ 0.71
CUEDC1Q9NWM3 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
CUEDC1Q9NWM3 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CUEDC1Q9NWM3 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CUEDC1Q9NWM3 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
CUEDC1Q9NWM3 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
CUEDC1Q9NWM3 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CUEDC1Q9NWM3 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CUEDC1Q9NWM3 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC19.48■□□□□ 0.71
CUEDC1Q9NWM3 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC19.48■□□□□ 0.71
CUEDC1Q9NWM3 GABARAPL3-202ENST00000624044 1851 ntBASIC19.48■□□□□ 0.71
CUEDC1Q9NWM3 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
CUEDC1Q9NWM3 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC19.48■□□□□ 0.71
CUEDC1Q9NWM3 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
CUEDC1Q9NWM3 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC19.48■□□□□ 0.71
CUEDC1Q9NWM3 AC091874.3-201ENST00000512672 1195 ntBASIC19.48■□□□□ 0.71
CUEDC1Q9NWM3 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC19.48■□□□□ 0.71
CUEDC1Q9NWM3 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC19.48■□□□□ 0.71
CUEDC1Q9NWM3 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC19.48■□□□□ 0.71
CUEDC1Q9NWM3 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CUEDC1Q9NWM3 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CUEDC1Q9NWM3 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC19.48■□□□□ 0.71
CUEDC1Q9NWM3 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC19.48■□□□□ 0.71
CUEDC1Q9NWM3 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CUEDC1Q9NWM3 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC19.48■□□□□ 0.71
CUEDC1Q9NWM3 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
CUEDC1Q9NWM3 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
CUEDC1Q9NWM3 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC19.48■□□□□ 0.71
CUEDC1Q9NWM3 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC19.48■□□□□ 0.71
CUEDC1Q9NWM3 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC19.47■□□□□ 0.71
CUEDC1Q9NWM3 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
CUEDC1Q9NWM3 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
CUEDC1Q9NWM3 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
CUEDC1Q9NWM3 DPP3P2-201ENST00000416030 1696 ntBASIC19.47■□□□□ 0.71
CUEDC1Q9NWM3 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC19.47■□□□□ 0.71
CUEDC1Q9NWM3 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
CUEDC1Q9NWM3 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
CUEDC1Q9NWM3 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC19.47■□□□□ 0.71
CUEDC1Q9NWM3 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC19.47■□□□□ 0.71
CUEDC1Q9NWM3 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
CUEDC1Q9NWM3 BET1L-207ENST00000529614 560 ntTSL 5 BASIC19.47■□□□□ 0.71
CUEDC1Q9NWM3 C2orf69P4-201ENST00000565394 541 ntBASIC19.47■□□□□ 0.71
CUEDC1Q9NWM3 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC19.47■□□□□ 0.71
CUEDC1Q9NWM3 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC19.47■□□□□ 0.71
CUEDC1Q9NWM3 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CUEDC1Q9NWM3 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CUEDC1Q9NWM3 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
CUEDC1Q9NWM3 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC19.47■□□□□ 0.71
CUEDC1Q9NWM3 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC19.47■□□□□ 0.71
CUEDC1Q9NWM3 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
CUEDC1Q9NWM3 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CUEDC1Q9NWM3 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
CUEDC1Q9NWM3 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC19.46■□□□□ 0.71
CUEDC1Q9NWM3 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC19.46■□□□□ 0.71
CUEDC1Q9NWM3 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC19.46■□□□□ 0.71
CUEDC1Q9NWM3 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CUEDC1Q9NWM3 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
CUEDC1Q9NWM3 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CUEDC1Q9NWM3 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CUEDC1Q9NWM3 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CUEDC1Q9NWM3 SMG8-203ENST00000578922 2178 ntBASIC19.46■□□□□ 0.71
CUEDC1Q9NWM3 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC19.46■□□□□ 0.71
CUEDC1Q9NWM3 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
CUEDC1Q9NWM3 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CUEDC1Q9NWM3 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
CUEDC1Q9NWM3 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
CUEDC1Q9NWM3 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC19.46■□□□□ 0.71
CUEDC1Q9NWM3 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC19.46■□□□□ 0.71
CUEDC1Q9NWM3 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
CUEDC1Q9NWM3 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
CUEDC1Q9NWM3 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC19.46■□□□□ 0.71
CUEDC1Q9NWM3 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
CUEDC1Q9NWM3 AL512408.1-201ENST00000569378 2000 ntBASIC19.46■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms