Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CHMP1AQ9HD42 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CHMP1AQ9HD42 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC17.31■□□□□ 0.36
CHMP1AQ9HD42 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
CHMP1AQ9HD42 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CHMP1AQ9HD42 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC17.3■□□□□ 0.36
CHMP1AQ9HD42 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CHMP1AQ9HD42 STAC-204ENST00000457375 1366 ntTSL 2 BASIC17.3■□□□□ 0.36
CHMP1AQ9HD42 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
CHMP1AQ9HD42 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
CHMP1AQ9HD42 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CHMP1AQ9HD42 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
CHMP1AQ9HD42 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CHMP1AQ9HD42 NME4-202ENST00000382940 766 ntTSL 3 BASIC17.3■□□□□ 0.36
CHMP1AQ9HD42 POU5F1P4-201ENST00000413175 1085 ntBASIC17.3■□□□□ 0.36
CHMP1AQ9HD42 NME4-211ENST00000620944 1193 ntTSL 2 BASIC17.3■□□□□ 0.36
CHMP1AQ9HD42 AL136967.2-201ENST00000623968 743 ntBASIC17.3■□□□□ 0.36
CHMP1AQ9HD42 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CHMP1AQ9HD42 RALB-208ENST00000631312 311 ntTSL 5 BASIC17.3■□□□□ 0.36
CHMP1AQ9HD42 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC17.3■□□□□ 0.36
CHMP1AQ9HD42 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC17.3■□□□□ 0.36
CHMP1AQ9HD42 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CHMP1AQ9HD42 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CHMP1AQ9HD42 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CHMP1AQ9HD42 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
CHMP1AQ9HD42 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CHMP1AQ9HD42 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
CHMP1AQ9HD42 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
CHMP1AQ9HD42 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC17.3■□□□□ 0.36
CHMP1AQ9HD42 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CHMP1AQ9HD42 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC17.3■□□□□ 0.36
CHMP1AQ9HD42 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
CHMP1AQ9HD42 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CHMP1AQ9HD42 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
CHMP1AQ9HD42 AC018445.3-201ENST00000624177 1945 ntBASIC17.29■□□□□ 0.36
CHMP1AQ9HD42 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CHMP1AQ9HD42 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
CHMP1AQ9HD42 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CHMP1AQ9HD42 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CHMP1AQ9HD42 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
CHMP1AQ9HD42 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CHMP1AQ9HD42 MTURN-203ENST00000409688 843 ntTSL 2 BASIC17.29■□□□□ 0.36
CHMP1AQ9HD42 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC17.29■□□□□ 0.36
CHMP1AQ9HD42 AC120498.10-201ENST00000621827 505 ntBASIC17.29■□□□□ 0.36
CHMP1AQ9HD42 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CHMP1AQ9HD42 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC17.29■□□□□ 0.36
CHMP1AQ9HD42 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC17.29■□□□□ 0.36
CHMP1AQ9HD42 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC17.29■□□□□ 0.36
CHMP1AQ9HD42 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CHMP1AQ9HD42 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
CHMP1AQ9HD42 AL158211.5-201ENST00000623583 2518 ntBASIC17.28■□□□□ 0.36
CHMP1AQ9HD42 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CHMP1AQ9HD42 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC17.28■□□□□ 0.36
CHMP1AQ9HD42 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
CHMP1AQ9HD42 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
CHMP1AQ9HD42 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CHMP1AQ9HD42 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CHMP1AQ9HD42 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
CHMP1AQ9HD42 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CHMP1AQ9HD42 DET1-207ENST00000564406 2315 ntTSL 2 BASIC17.28■□□□□ 0.36
CHMP1AQ9HD42 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
CHMP1AQ9HD42 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CHMP1AQ9HD42 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
CHMP1AQ9HD42 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
CHMP1AQ9HD42 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC17.28■□□□□ 0.36
CHMP1AQ9HD42 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CHMP1AQ9HD42 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CHMP1AQ9HD42 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CHMP1AQ9HD42 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CHMP1AQ9HD42 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CHMP1AQ9HD42 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
CHMP1AQ9HD42 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CHMP1AQ9HD42 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CHMP1AQ9HD42 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CHMP1AQ9HD42 AC112907.3-201ENST00000577781 2400 ntBASIC17.27■□□□□ 0.36
CHMP1AQ9HD42 KRT87P-202ENST00000534226 1464 ntBASIC17.27■□□□□ 0.36
CHMP1AQ9HD42 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CHMP1AQ9HD42 AC245052.3-201ENST00000450182 901 ntBASIC17.27■□□□□ 0.36
CHMP1AQ9HD42 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC17.27■□□□□ 0.36
CHMP1AQ9HD42 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC17.27■□□□□ 0.36
CHMP1AQ9HD42 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC17.27■□□□□ 0.36
CHMP1AQ9HD42 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC17.27■□□□□ 0.36
CHMP1AQ9HD42 MIR6084-201ENST00000622012 110 ntBASIC17.27■□□□□ 0.36
CHMP1AQ9HD42 AL358852.1-201ENST00000623174 1268 ntBASIC17.27■□□□□ 0.36
CHMP1AQ9HD42 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CHMP1AQ9HD42 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
CHMP1AQ9HD42 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
CHMP1AQ9HD42 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC17.27■□□□□ 0.35
CHMP1AQ9HD42 AC020763.4-201ENST00000623414 4170 ntBASIC17.27■□□□□ 0.35
CHMP1AQ9HD42 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC17.27■□□□□ 0.35
CHMP1AQ9HD42 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CHMP1AQ9HD42 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
CHMP1AQ9HD42 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
CHMP1AQ9HD42 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CHMP1AQ9HD42 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
CHMP1AQ9HD42 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CHMP1AQ9HD42 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC17.26■□□□□ 0.35
CHMP1AQ9HD42 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
CHMP1AQ9HD42 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CHMP1AQ9HD42 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 21.7 ms