Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
PCDH9Q9HC56 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
PCDH9Q9HC56 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
PCDH9Q9HC56 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
PCDH9Q9HC56 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC20.82■□□□□ 0.92
PCDH9Q9HC56 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
PCDH9Q9HC56 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC20.82■□□□□ 0.92
PCDH9Q9HC56 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
PCDH9Q9HC56 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
PCDH9Q9HC56 AC068338.2-201ENST00000563278 1430 ntBASIC20.82■□□□□ 0.92
PCDH9Q9HC56 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
PCDH9Q9HC56 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
PCDH9Q9HC56 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
PCDH9Q9HC56 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
PCDH9Q9HC56 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
PCDH9Q9HC56 FAM21FP-204ENST00000608637 956 ntBASIC20.82■□□□□ 0.92
PCDH9Q9HC56 MAZ-216ENST00000616501 991 ntTSL 5 BASIC20.82■□□□□ 0.92
PCDH9Q9HC56 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC20.82■□□□□ 0.92
PCDH9Q9HC56 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
PCDH9Q9HC56 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
PCDH9Q9HC56 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
PCDH9Q9HC56 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
PCDH9Q9HC56 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
PCDH9Q9HC56 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
PCDH9Q9HC56 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC20.81■□□□□ 0.92
PCDH9Q9HC56 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
PCDH9Q9HC56 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC20.81■□□□□ 0.92
PCDH9Q9HC56 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
PCDH9Q9HC56 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
PCDH9Q9HC56 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC20.81■□□□□ 0.92
PCDH9Q9HC56 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
PCDH9Q9HC56 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
PCDH9Q9HC56 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
PCDH9Q9HC56 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC20.81■□□□□ 0.92
PCDH9Q9HC56 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC20.81■□□□□ 0.92
PCDH9Q9HC56 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC20.81■□□□□ 0.92
PCDH9Q9HC56 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
PCDH9Q9HC56 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
PCDH9Q9HC56 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
PCDH9Q9HC56 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
PCDH9Q9HC56 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
PCDH9Q9HC56 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC20.81■□□□□ 0.92
PCDH9Q9HC56 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
PCDH9Q9HC56 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC20.81■□□□□ 0.92
PCDH9Q9HC56 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC20.81■□□□□ 0.92
PCDH9Q9HC56 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
PCDH9Q9HC56 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC20.8■□□□□ 0.92
PCDH9Q9HC56 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
PCDH9Q9HC56 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
PCDH9Q9HC56 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC20.8■□□□□ 0.92
PCDH9Q9HC56 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
PCDH9Q9HC56 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
PCDH9Q9HC56 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
PCDH9Q9HC56 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC20.8■□□□□ 0.92
PCDH9Q9HC56 AC026185.1-201ENST00000445748 174 ntBASIC20.8■□□□□ 0.92
PCDH9Q9HC56 AL162412.1-201ENST00000567129 965 ntBASIC20.8■□□□□ 0.92
PCDH9Q9HC56 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC20.8■□□□□ 0.92
PCDH9Q9HC56 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC20.8■□□□□ 0.92
PCDH9Q9HC56 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC20.8■□□□□ 0.92
PCDH9Q9HC56 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC20.8■□□□□ 0.92
PCDH9Q9HC56 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC20.8■□□□□ 0.92
PCDH9Q9HC56 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC20.8■□□□□ 0.92
PCDH9Q9HC56 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC20.8■□□□□ 0.92
PCDH9Q9HC56 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
PCDH9Q9HC56 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC20.8■□□□□ 0.92
PCDH9Q9HC56 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC20.8■□□□□ 0.92
PCDH9Q9HC56 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
PCDH9Q9HC56 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC20.8■□□□□ 0.92
PCDH9Q9HC56 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC20.8■□□□□ 0.92
PCDH9Q9HC56 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC20.8■□□□□ 0.92
PCDH9Q9HC56 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC20.8■□□□□ 0.92
PCDH9Q9HC56 DPP3P2-201ENST00000416030 1696 ntBASIC20.8■□□□□ 0.92
PCDH9Q9HC56 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
PCDH9Q9HC56 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
PCDH9Q9HC56 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
PCDH9Q9HC56 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC20.79■□□□□ 0.92
PCDH9Q9HC56 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC20.79■□□□□ 0.92
PCDH9Q9HC56 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
PCDH9Q9HC56 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
PCDH9Q9HC56 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
PCDH9Q9HC56 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC20.79■□□□□ 0.92
PCDH9Q9HC56 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
PCDH9Q9HC56 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
PCDH9Q9HC56 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC20.79■□□□□ 0.92
PCDH9Q9HC56 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC20.79■□□□□ 0.92
PCDH9Q9HC56 RAP2CP1-201ENST00000605103 478 ntBASIC20.79■□□□□ 0.92
PCDH9Q9HC56 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
PCDH9Q9HC56 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC20.79■□□□□ 0.92
PCDH9Q9HC56 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
PCDH9Q9HC56 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC20.79■□□□□ 0.92
PCDH9Q9HC56 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
PCDH9Q9HC56 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC20.79■□□□□ 0.92
PCDH9Q9HC56 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
PCDH9Q9HC56 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
PCDH9Q9HC56 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
PCDH9Q9HC56 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC20.78■□□□□ 0.92
PCDH9Q9HC56 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC20.78■□□□□ 0.92
PCDH9Q9HC56 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
PCDH9Q9HC56 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
PCDH9Q9HC56 PBX1-209ENST00000485769 834 ntTSL 2 BASIC20.78■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 21.1 ms