Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
LIME1Q9H400 AL049796.1-201ENST00000565336 1766 ntBASIC17.69■□□□□ 0.42
LIME1Q9H400 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
LIME1Q9H400 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
LIME1Q9H400 RPS2P55-201ENST00000397318 883 ntBASIC17.69■□□□□ 0.42
LIME1Q9H400 POM121L13P-201ENST00000422362 380 ntBASIC17.69■□□□□ 0.42
LIME1Q9H400 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
LIME1Q9H400 AC107956.1-201ENST00000494359 873 ntBASIC17.69■□□□□ 0.42
LIME1Q9H400 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
LIME1Q9H400 KLF2-202ENST00000592003 564 ntTSL 3 BASIC17.69■□□□□ 0.42
LIME1Q9H400 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
LIME1Q9H400 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
LIME1Q9H400 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC17.69■□□□□ 0.42
LIME1Q9H400 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
LIME1Q9H400 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC17.69■□□□□ 0.42
LIME1Q9H400 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
LIME1Q9H400 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC17.69■□□□□ 0.42
LIME1Q9H400 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
LIME1Q9H400 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
LIME1Q9H400 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC17.68■□□□□ 0.42
LIME1Q9H400 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
LIME1Q9H400 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC17.68■□□□□ 0.42
LIME1Q9H400 FEM1AP1-201ENST00000431297 1995 ntBASIC17.68■□□□□ 0.42
LIME1Q9H400 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC17.68■□□□□ 0.42
LIME1Q9H400 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
LIME1Q9H400 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
LIME1Q9H400 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
LIME1Q9H400 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
LIME1Q9H400 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
LIME1Q9H400 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
LIME1Q9H400 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
LIME1Q9H400 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
LIME1Q9H400 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
LIME1Q9H400 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC17.68■□□□□ 0.42
LIME1Q9H400 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC17.68■□□□□ 0.42
LIME1Q9H400 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC17.68■□□□□ 0.42
LIME1Q9H400 AC233702.5-201ENST00000584107 538 ntBASIC17.68■□□□□ 0.42
LIME1Q9H400 AC133561.5-201ENST00000635547 218 ntBASIC17.68■□□□□ 0.42
LIME1Q9H400 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
LIME1Q9H400 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
LIME1Q9H400 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC17.68■□□□□ 0.42
LIME1Q9H400 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
LIME1Q9H400 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
LIME1Q9H400 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
LIME1Q9H400 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
LIME1Q9H400 CRK-204ENST00000574295 1391 ntTSL 5 BASIC17.67■□□□□ 0.42
LIME1Q9H400 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
LIME1Q9H400 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC17.67■□□□□ 0.42
LIME1Q9H400 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
LIME1Q9H400 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC17.67■□□□□ 0.42
LIME1Q9H400 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
LIME1Q9H400 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
LIME1Q9H400 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
LIME1Q9H400 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC17.67■□□□□ 0.42
LIME1Q9H400 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
LIME1Q9H400 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC17.67■□□□□ 0.42
LIME1Q9H400 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
LIME1Q9H400 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
LIME1Q9H400 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC17.67■□□□□ 0.42
LIME1Q9H400 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC17.67■□□□□ 0.42
LIME1Q9H400 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
LIME1Q9H400 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC17.67■□□□□ 0.42
LIME1Q9H400 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
LIME1Q9H400 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
LIME1Q9H400 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
LIME1Q9H400 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
LIME1Q9H400 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
LIME1Q9H400 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
LIME1Q9H400 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
LIME1Q9H400 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
LIME1Q9H400 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
LIME1Q9H400 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
LIME1Q9H400 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
LIME1Q9H400 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
LIME1Q9H400 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
LIME1Q9H400 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
LIME1Q9H400 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
LIME1Q9H400 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC17.66■□□□□ 0.42
LIME1Q9H400 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC17.66■□□□□ 0.42
LIME1Q9H400 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC17.66■□□□□ 0.42
LIME1Q9H400 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC17.66■□□□□ 0.42
LIME1Q9H400 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
LIME1Q9H400 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC17.66■□□□□ 0.42
LIME1Q9H400 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
LIME1Q9H400 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
LIME1Q9H400 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
LIME1Q9H400 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
LIME1Q9H400 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
LIME1Q9H400 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC17.66■□□□□ 0.42
LIME1Q9H400 NXN-202ENST00000537628 1340 ntTSL 3 BASIC17.66■□□□□ 0.42
LIME1Q9H400 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
LIME1Q9H400 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
LIME1Q9H400 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
LIME1Q9H400 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
LIME1Q9H400 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
LIME1Q9H400 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC17.65■□□□□ 0.42
LIME1Q9H400 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC17.65■□□□□ 0.42
LIME1Q9H400 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC17.65■□□□□ 0.42
LIME1Q9H400 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
LIME1Q9H400 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms