Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
MMP28Q9H239 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
MMP28Q9H239 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
MMP28Q9H239 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
MMP28Q9H239 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
MMP28Q9H239 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
MMP28Q9H239 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC17.73■□□□□ 0.43
MMP28Q9H239 AP001330.3-201ENST00000520123 633 ntBASIC17.73■□□□□ 0.43
MMP28Q9H239 AC126544.1-201ENST00000580842 1059 ntBASIC17.73■□□□□ 0.43
MMP28Q9H239 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC17.73■□□□□ 0.43
MMP28Q9H239 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
MMP28Q9H239 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
MMP28Q9H239 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
MMP28Q9H239 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC17.73■□□□□ 0.43
MMP28Q9H239 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC17.73■□□□□ 0.43
MMP28Q9H239 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC17.73■□□□□ 0.43
MMP28Q9H239 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
MMP28Q9H239 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC17.73■□□□□ 0.43
MMP28Q9H239 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
MMP28Q9H239 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
MMP28Q9H239 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC17.72■□□□□ 0.43
MMP28Q9H239 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
MMP28Q9H239 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC17.72■□□□□ 0.43
MMP28Q9H239 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
MMP28Q9H239 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
MMP28Q9H239 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC17.72■□□□□ 0.43
MMP28Q9H239 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC17.72■□□□□ 0.43
MMP28Q9H239 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC17.72■□□□□ 0.43
MMP28Q9H239 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
MMP28Q9H239 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
MMP28Q9H239 AC003102.1-202ENST00000563394 1796 ntBASIC17.72■□□□□ 0.43
MMP28Q9H239 AP004607.7-201ENST00000527152 1677 ntBASIC17.72■□□□□ 0.43
MMP28Q9H239 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC17.72■□□□□ 0.43
MMP28Q9H239 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
MMP28Q9H239 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
MMP28Q9H239 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
MMP28Q9H239 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC17.72■□□□□ 0.43
MMP28Q9H239 AC099791.1-201ENST00000416440 715 ntBASIC17.72■□□□□ 0.43
MMP28Q9H239 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
MMP28Q9H239 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC17.72■□□□□ 0.43
MMP28Q9H239 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
MMP28Q9H239 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
MMP28Q9H239 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC17.72■□□□□ 0.43
MMP28Q9H239 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
MMP28Q9H239 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
MMP28Q9H239 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
MMP28Q9H239 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
MMP28Q9H239 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC17.72■□□□□ 0.43
MMP28Q9H239 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
MMP28Q9H239 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
MMP28Q9H239 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
MMP28Q9H239 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC17.71■□□□□ 0.43
MMP28Q9H239 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC17.71■□□□□ 0.43
MMP28Q9H239 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
MMP28Q9H239 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
MMP28Q9H239 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
MMP28Q9H239 ADK-206ENST00000541550 2222 ntTSL 2 BASIC17.71■□□□□ 0.43
MMP28Q9H239 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC17.71■□□□□ 0.43
MMP28Q9H239 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
MMP28Q9H239 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
MMP28Q9H239 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
MMP28Q9H239 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
MMP28Q9H239 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
MMP28Q9H239 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
MMP28Q9H239 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
MMP28Q9H239 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
MMP28Q9H239 MPST-208ENST00000628507 698 ntTSL 5 BASIC17.71■□□□□ 0.43
MMP28Q9H239 AC020763.4-201ENST00000623414 4170 ntBASIC17.71■□□□□ 0.43
MMP28Q9H239 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC17.71■□□□□ 0.43
MMP28Q9H239 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC17.71■□□□□ 0.43
MMP28Q9H239 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
MMP28Q9H239 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
MMP28Q9H239 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
MMP28Q9H239 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC17.71■□□□□ 0.42
MMP28Q9H239 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.42
MMP28Q9H239 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
MMP28Q9H239 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
MMP28Q9H239 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
MMP28Q9H239 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
MMP28Q9H239 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC17.7■□□□□ 0.42
MMP28Q9H239 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
MMP28Q9H239 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
MMP28Q9H239 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
MMP28Q9H239 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
MMP28Q9H239 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
MMP28Q9H239 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
MMP28Q9H239 MIR939-201ENST00000401314 82 ntBASIC17.7■□□□□ 0.42
MMP28Q9H239 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
MMP28Q9H239 AC105265.2-201ENST00000467189 838 ntBASIC17.7■□□□□ 0.42
MMP28Q9H239 AC091305.1-201ENST00000479476 895 ntBASIC17.7■□□□□ 0.42
MMP28Q9H239 AICDA-202ENST00000537228 667 ntTSL 5 BASIC17.7■□□□□ 0.42
MMP28Q9H239 AF213884.3-201ENST00000563833 479 ntBASIC17.7■□□□□ 0.42
MMP28Q9H239 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
MMP28Q9H239 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
MMP28Q9H239 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC17.7■□□□□ 0.42
MMP28Q9H239 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC17.7■□□□□ 0.42
MMP28Q9H239 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC17.7■□□□□ 0.42
MMP28Q9H239 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
MMP28Q9H239 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
MMP28Q9H239 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms