Protein–RNA interactions for Protein: Q9H1J1

UPF3A, Regulator of nonsense transcripts 3A, humanhuman

Known RBP Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3AQ9H1J1 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
UPF3AQ9H1J1 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
UPF3AQ9H1J1 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC22.56■■□□□ 1.2
UPF3AQ9H1J1 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
UPF3AQ9H1J1 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC22.55■■□□□ 1.2
UPF3AQ9H1J1 STAC-204ENST00000457375 1366 ntTSL 2 BASIC22.55■■□□□ 1.2
UPF3AQ9H1J1 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
UPF3AQ9H1J1 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
UPF3AQ9H1J1 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC22.55■■□□□ 1.2
UPF3AQ9H1J1 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC22.55■■□□□ 1.2
UPF3AQ9H1J1 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC22.55■■□□□ 1.2
UPF3AQ9H1J1 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC22.55■■□□□ 1.2
UPF3AQ9H1J1 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC22.55■■□□□ 1.2
UPF3AQ9H1J1 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC22.55■■□□□ 1.2
UPF3AQ9H1J1 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
UPF3AQ9H1J1 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC22.55■■□□□ 1.2
UPF3AQ9H1J1 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC22.55■■□□□ 1.2
UPF3AQ9H1J1 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
UPF3AQ9H1J1 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
UPF3AQ9H1J1 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC22.54■■□□□ 1.2
UPF3AQ9H1J1 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
UPF3AQ9H1J1 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
UPF3AQ9H1J1 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC22.54■■□□□ 1.2
UPF3AQ9H1J1 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC22.54■■□□□ 1.2
UPF3AQ9H1J1 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC22.54■■□□□ 1.2
UPF3AQ9H1J1 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC22.54■■□□□ 1.2
UPF3AQ9H1J1 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC22.54■■□□□ 1.2
UPF3AQ9H1J1 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC22.54■■□□□ 1.2
UPF3AQ9H1J1 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC22.54■■□□□ 1.2
UPF3AQ9H1J1 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
UPF3AQ9H1J1 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
UPF3AQ9H1J1 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
UPF3AQ9H1J1 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
UPF3AQ9H1J1 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
UPF3AQ9H1J1 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC22.54■■□□□ 1.2
UPF3AQ9H1J1 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC22.53■■□□□ 1.2
UPF3AQ9H1J1 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC22.53■■□□□ 1.2
UPF3AQ9H1J1 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
UPF3AQ9H1J1 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC22.53■■□□□ 1.2
UPF3AQ9H1J1 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
UPF3AQ9H1J1 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC22.53■■□□□ 1.2
UPF3AQ9H1J1 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC22.53■■□□□ 1.2
UPF3AQ9H1J1 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC22.53■■□□□ 1.2
UPF3AQ9H1J1 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC22.53■■□□□ 1.2
UPF3AQ9H1J1 TMPOP1-202ENST00000424642 1267 ntBASIC22.53■■□□□ 1.2
UPF3AQ9H1J1 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC22.53■■□□□ 1.2
UPF3AQ9H1J1 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
UPF3AQ9H1J1 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC22.53■■□□□ 1.2
UPF3AQ9H1J1 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC22.53■■□□□ 1.2
UPF3AQ9H1J1 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC22.53■■□□□ 1.2
UPF3AQ9H1J1 ECEL1P1-201ENST00000373592 1742 ntBASIC22.53■■□□□ 1.2
UPF3AQ9H1J1 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC22.53■■□□□ 1.2
UPF3AQ9H1J1 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC22.53■■□□□ 1.2
UPF3AQ9H1J1 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC22.53■■□□□ 1.2
UPF3AQ9H1J1 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC22.53■■□□□ 1.2
UPF3AQ9H1J1 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
UPF3AQ9H1J1 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC22.53■■□□□ 1.2
UPF3AQ9H1J1 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC22.52■■□□□ 1.2
UPF3AQ9H1J1 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC22.52■■□□□ 1.2
UPF3AQ9H1J1 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC22.52■■□□□ 1.2
UPF3AQ9H1J1 NUDT16P1-203ENST00000513809 620 ntBASIC22.52■■□□□ 1.2
UPF3AQ9H1J1 PNN-205ENST00000556530 601 ntTSL 2 BASIC22.52■■□□□ 1.2
UPF3AQ9H1J1 RN7SL850P-201ENST00000579959 291 ntBASIC22.52■■□□□ 1.2
UPF3AQ9H1J1 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC22.52■■□□□ 1.2
UPF3AQ9H1J1 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC22.52■■□□□ 1.2
UPF3AQ9H1J1 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC22.52■■□□□ 1.2
UPF3AQ9H1J1 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
UPF3AQ9H1J1 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC22.52■■□□□ 1.2
UPF3AQ9H1J1 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
UPF3AQ9H1J1 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
UPF3AQ9H1J1 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
UPF3AQ9H1J1 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
UPF3AQ9H1J1 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
UPF3AQ9H1J1 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
UPF3AQ9H1J1 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
UPF3AQ9H1J1 RBM17P1-201ENST00000453646 1190 ntBASIC22.51■■□□□ 1.19
UPF3AQ9H1J1 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
UPF3AQ9H1J1 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC22.51■■□□□ 1.19
UPF3AQ9H1J1 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC22.51■■□□□ 1.19
UPF3AQ9H1J1 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC22.51■■□□□ 1.19
UPF3AQ9H1J1 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC22.51■■□□□ 1.19
UPF3AQ9H1J1 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC22.51■■□□□ 1.19
UPF3AQ9H1J1 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC22.51■■□□□ 1.19
UPF3AQ9H1J1 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
UPF3AQ9H1J1 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
UPF3AQ9H1J1 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC22.51■■□□□ 1.19
UPF3AQ9H1J1 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC22.51■■□□□ 1.19
UPF3AQ9H1J1 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC22.5■■□□□ 1.19
UPF3AQ9H1J1 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC22.5■■□□□ 1.19
UPF3AQ9H1J1 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
UPF3AQ9H1J1 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
UPF3AQ9H1J1 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
UPF3AQ9H1J1 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
UPF3AQ9H1J1 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC22.5■■□□□ 1.19
UPF3AQ9H1J1 AC145285.6-201ENST00000604632 637 ntBASIC22.5■■□□□ 1.19
UPF3AQ9H1J1 AL445228.2-201ENST00000605589 952 ntBASIC22.5■■□□□ 1.19
UPF3AQ9H1J1 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC22.5■■□□□ 1.19
UPF3AQ9H1J1 DECR2-212ENST00000627716 352 ntTSL 2 BASIC22.5■■□□□ 1.19
UPF3AQ9H1J1 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC22.5■■□□□ 1.19
UPF3AQ9H1J1 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC22.5■■□□□ 1.19
Retrieved 100 of 98,524 protein–RNA pairs in 19.2 ms