Protein–RNA interactions for Protein: Q96PY6

NEK1, Serine/threonine-protein kinase Nek1, humanhuman

Predictions only

Length 1,258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK1Q96PY6 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC23.9■■□□□ 1.42
NEK1Q96PY6 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
NEK1Q96PY6 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC23.9■■□□□ 1.42
NEK1Q96PY6 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC23.9■■□□□ 1.42
NEK1Q96PY6 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
NEK1Q96PY6 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
NEK1Q96PY6 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC23.9■■□□□ 1.42
NEK1Q96PY6 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC23.9■■□□□ 1.42
NEK1Q96PY6 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC23.9■■□□□ 1.42
NEK1Q96PY6 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
NEK1Q96PY6 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
NEK1Q96PY6 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
NEK1Q96PY6 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC23.9■■□□□ 1.42
NEK1Q96PY6 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC23.9■■□□□ 1.42
NEK1Q96PY6 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC23.9■■□□□ 1.42
NEK1Q96PY6 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC23.9■■□□□ 1.42
NEK1Q96PY6 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC23.9■■□□□ 1.42
NEK1Q96PY6 AL589743.5-201ENST00000616611 1050 ntBASIC23.9■■□□□ 1.42
NEK1Q96PY6 MARS-234ENST00000630571 216 ntTSL 5 BASIC23.9■■□□□ 1.42
NEK1Q96PY6 MARS-235ENST00000630803 183 ntTSL 3 BASIC23.9■■□□□ 1.42
NEK1Q96PY6 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC23.9■■□□□ 1.42
NEK1Q96PY6 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
NEK1Q96PY6 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
NEK1Q96PY6 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC23.9■■□□□ 1.42
NEK1Q96PY6 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
NEK1Q96PY6 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC23.9■■□□□ 1.42
NEK1Q96PY6 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
NEK1Q96PY6 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC23.9■■□□□ 1.42
NEK1Q96PY6 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC23.9■■□□□ 1.42
NEK1Q96PY6 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC23.9■■□□□ 1.42
NEK1Q96PY6 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC23.9■■□□□ 1.42
NEK1Q96PY6 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
NEK1Q96PY6 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC23.89■■□□□ 1.42
NEK1Q96PY6 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
NEK1Q96PY6 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC23.89■■□□□ 1.42
NEK1Q96PY6 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC23.89■■□□□ 1.42
NEK1Q96PY6 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
NEK1Q96PY6 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
NEK1Q96PY6 METTL15-202ENST00000403099 795 ntTSL 5 BASIC23.89■■□□□ 1.41
NEK1Q96PY6 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC23.89■■□□□ 1.41
NEK1Q96PY6 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC23.89■■□□□ 1.41
NEK1Q96PY6 ISCU-212ENST00000547005 795 ntTSL 3 BASIC23.89■■□□□ 1.41
NEK1Q96PY6 OAS3-207ENST00000551007 998 ntTSL 2 BASIC23.89■■□□□ 1.41
NEK1Q96PY6 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC23.89■■□□□ 1.41
NEK1Q96PY6 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC23.89■■□□□ 1.41
NEK1Q96PY6 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
NEK1Q96PY6 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
NEK1Q96PY6 MKRN4P-201ENST00000444706 1521 ntBASIC23.89■■□□□ 1.41
NEK1Q96PY6 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC23.89■■□□□ 1.41
NEK1Q96PY6 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
NEK1Q96PY6 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
NEK1Q96PY6 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC23.88■■□□□ 1.41
NEK1Q96PY6 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC23.88■■□□□ 1.41
NEK1Q96PY6 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
NEK1Q96PY6 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
NEK1Q96PY6 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC23.88■■□□□ 1.41
NEK1Q96PY6 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC23.88■■□□□ 1.41
NEK1Q96PY6 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
NEK1Q96PY6 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
NEK1Q96PY6 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
NEK1Q96PY6 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC23.88■■□□□ 1.41
NEK1Q96PY6 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC23.88■■□□□ 1.41
NEK1Q96PY6 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC23.88■■□□□ 1.41
NEK1Q96PY6 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
NEK1Q96PY6 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC23.87■■□□□ 1.41
NEK1Q96PY6 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
NEK1Q96PY6 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
NEK1Q96PY6 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
NEK1Q96PY6 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC23.87■■□□□ 1.41
NEK1Q96PY6 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC23.87■■□□□ 1.41
NEK1Q96PY6 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC23.87■■□□□ 1.41
NEK1Q96PY6 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC23.87■■□□□ 1.41
NEK1Q96PY6 PPP1R14BP3-201ENST00000509033 445 ntBASIC23.87■■□□□ 1.41
NEK1Q96PY6 PHB2-213ENST00000546111 858 ntTSL 2 BASIC23.87■■□□□ 1.41
NEK1Q96PY6 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC23.87■■□□□ 1.41
NEK1Q96PY6 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC23.87■■□□□ 1.41
NEK1Q96PY6 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
NEK1Q96PY6 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC23.87■■□□□ 1.41
NEK1Q96PY6 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
NEK1Q96PY6 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
NEK1Q96PY6 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC23.87■■□□□ 1.41
NEK1Q96PY6 PTBP1P-201ENST00000554374 1601 ntBASIC23.87■■□□□ 1.41
NEK1Q96PY6 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC23.87■■□□□ 1.41
NEK1Q96PY6 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC23.86■■□□□ 1.41
NEK1Q96PY6 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC23.86■■□□□ 1.41
NEK1Q96PY6 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC23.86■■□□□ 1.41
NEK1Q96PY6 ME2-218ENST00000640965 2476 ntTSL 5 BASIC23.86■■□□□ 1.41
NEK1Q96PY6 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
NEK1Q96PY6 ID1-201ENST00000376105 1233 ntBASIC23.86■■□□□ 1.41
NEK1Q96PY6 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
NEK1Q96PY6 AC006970.2-201ENST00000450065 779 ntBASIC23.86■■□□□ 1.41
NEK1Q96PY6 AC083906.2-201ENST00000511578 360 ntBASIC23.86■■□□□ 1.41
NEK1Q96PY6 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC23.86■■□□□ 1.41
NEK1Q96PY6 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC23.86■■□□□ 1.41
NEK1Q96PY6 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
NEK1Q96PY6 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC23.86■■□□□ 1.41
NEK1Q96PY6 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
NEK1Q96PY6 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC23.86■■□□□ 1.41
NEK1Q96PY6 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC23.85■■□□□ 1.41
NEK1Q96PY6 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms