Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 CRK-204ENST00000574295 1391 ntTSL 5 BASIC19.4■□□□□ 0.7
CLIP3Q96DZ5 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC19.4■□□□□ 0.7
CLIP3Q96DZ5 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
CLIP3Q96DZ5 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
CLIP3Q96DZ5 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CLIP3Q96DZ5 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC19.4■□□□□ 0.7
CLIP3Q96DZ5 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CLIP3Q96DZ5 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.7
CLIP3Q96DZ5 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC19.39■□□□□ 0.7
CLIP3Q96DZ5 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC19.39■□□□□ 0.7
CLIP3Q96DZ5 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
CLIP3Q96DZ5 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
CLIP3Q96DZ5 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
CLIP3Q96DZ5 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
CLIP3Q96DZ5 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
CLIP3Q96DZ5 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC19.39■□□□□ 0.69
CLIP3Q96DZ5 AC128676.1-201ENST00000454392 318 ntBASIC19.39■□□□□ 0.69
CLIP3Q96DZ5 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
CLIP3Q96DZ5 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC19.39■□□□□ 0.69
CLIP3Q96DZ5 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC19.39■□□□□ 0.69
CLIP3Q96DZ5 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC19.39■□□□□ 0.69
CLIP3Q96DZ5 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CLIP3Q96DZ5 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
CLIP3Q96DZ5 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC19.39■□□□□ 0.69
CLIP3Q96DZ5 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
CLIP3Q96DZ5 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CLIP3Q96DZ5 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC19.39■□□□□ 0.69
CLIP3Q96DZ5 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CLIP3Q96DZ5 AC026310.3-201ENST00000625186 2373 ntBASIC19.39■□□□□ 0.69
CLIP3Q96DZ5 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CLIP3Q96DZ5 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
CLIP3Q96DZ5 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CLIP3Q96DZ5 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CLIP3Q96DZ5 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC19.38■□□□□ 0.69
CLIP3Q96DZ5 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
CLIP3Q96DZ5 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CLIP3Q96DZ5 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
CLIP3Q96DZ5 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
CLIP3Q96DZ5 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC19.38■□□□□ 0.69
CLIP3Q96DZ5 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
CLIP3Q96DZ5 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
CLIP3Q96DZ5 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC19.38■□□□□ 0.69
CLIP3Q96DZ5 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
CLIP3Q96DZ5 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC19.38■□□□□ 0.69
CLIP3Q96DZ5 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CLIP3Q96DZ5 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC19.38■□□□□ 0.69
CLIP3Q96DZ5 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
CLIP3Q96DZ5 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
CLIP3Q96DZ5 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
CLIP3Q96DZ5 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
CLIP3Q96DZ5 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC19.37■□□□□ 0.69
CLIP3Q96DZ5 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC19.37■□□□□ 0.69
CLIP3Q96DZ5 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
CLIP3Q96DZ5 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CLIP3Q96DZ5 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CLIP3Q96DZ5 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
CLIP3Q96DZ5 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CLIP3Q96DZ5 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
CLIP3Q96DZ5 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
CLIP3Q96DZ5 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CLIP3Q96DZ5 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC19.37■□□□□ 0.69
CLIP3Q96DZ5 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
CLIP3Q96DZ5 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC19.37■□□□□ 0.69
CLIP3Q96DZ5 REXO2-208ENST00000539754 791 ntTSL 2 BASIC19.37■□□□□ 0.69
CLIP3Q96DZ5 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
CLIP3Q96DZ5 AL356652.1-201ENST00000615962 565 ntBASIC19.37■□□□□ 0.69
CLIP3Q96DZ5 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
CLIP3Q96DZ5 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
CLIP3Q96DZ5 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC19.37■□□□□ 0.69
CLIP3Q96DZ5 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
CLIP3Q96DZ5 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
CLIP3Q96DZ5 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
CLIP3Q96DZ5 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
CLIP3Q96DZ5 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CLIP3Q96DZ5 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC19.36■□□□□ 0.69
CLIP3Q96DZ5 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
CLIP3Q96DZ5 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CLIP3Q96DZ5 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC19.36■□□□□ 0.69
CLIP3Q96DZ5 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
CLIP3Q96DZ5 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC19.36■□□□□ 0.69
CLIP3Q96DZ5 OR2A1-AS1-207ENST00000486094 819 ntBASIC19.36■□□□□ 0.69
CLIP3Q96DZ5 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC19.36■□□□□ 0.69
CLIP3Q96DZ5 DET1-205ENST00000558413 583 ntTSL 4 BASIC19.36■□□□□ 0.69
CLIP3Q96DZ5 C2orf69P4-201ENST00000565394 541 ntBASIC19.36■□□□□ 0.69
CLIP3Q96DZ5 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC19.36■□□□□ 0.69
CLIP3Q96DZ5 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
CLIP3Q96DZ5 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
CLIP3Q96DZ5 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
CLIP3Q96DZ5 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC19.35■□□□□ 0.69
CLIP3Q96DZ5 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CLIP3Q96DZ5 FEM1AP4-201ENST00000443167 1987 ntBASIC19.35■□□□□ 0.69
CLIP3Q96DZ5 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC19.35■□□□□ 0.69
CLIP3Q96DZ5 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
CLIP3Q96DZ5 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC19.35■□□□□ 0.69
CLIP3Q96DZ5 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC19.35■□□□□ 0.69
CLIP3Q96DZ5 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CLIP3Q96DZ5 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CLIP3Q96DZ5 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC19.35■□□□□ 0.69
CLIP3Q96DZ5 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC19.35■□□□□ 0.69
CLIP3Q96DZ5 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC19.35■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 20.1 ms