Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
DEPDC4Q8N2C3 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
DEPDC4Q8N2C3 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
DEPDC4Q8N2C3 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
DEPDC4Q8N2C3 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC18.69■□□□□ 0.58
DEPDC4Q8N2C3 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC18.69■□□□□ 0.58
DEPDC4Q8N2C3 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
DEPDC4Q8N2C3 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
DEPDC4Q8N2C3 ASL-203ENST00000380839 1765 ntTSL 5 BASIC18.68■□□□□ 0.58
DEPDC4Q8N2C3 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC18.68■□□□□ 0.58
DEPDC4Q8N2C3 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC18.68■□□□□ 0.58
DEPDC4Q8N2C3 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
DEPDC4Q8N2C3 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
DEPDC4Q8N2C3 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC18.68■□□□□ 0.58
DEPDC4Q8N2C3 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
DEPDC4Q8N2C3 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC18.68■□□□□ 0.58
DEPDC4Q8N2C3 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
DEPDC4Q8N2C3 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
DEPDC4Q8N2C3 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
DEPDC4Q8N2C3 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
DEPDC4Q8N2C3 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
DEPDC4Q8N2C3 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
DEPDC4Q8N2C3 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC18.68■□□□□ 0.58
DEPDC4Q8N2C3 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
DEPDC4Q8N2C3 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC18.68■□□□□ 0.58
DEPDC4Q8N2C3 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC18.68■□□□□ 0.58
DEPDC4Q8N2C3 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
DEPDC4Q8N2C3 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC18.68■□□□□ 0.58
DEPDC4Q8N2C3 STAC-204ENST00000457375 1366 ntTSL 2 BASIC18.68■□□□□ 0.58
DEPDC4Q8N2C3 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
DEPDC4Q8N2C3 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC18.67■□□□□ 0.58
DEPDC4Q8N2C3 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC18.67■□□□□ 0.58
DEPDC4Q8N2C3 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
DEPDC4Q8N2C3 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
DEPDC4Q8N2C3 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
DEPDC4Q8N2C3 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC18.67■□□□□ 0.58
DEPDC4Q8N2C3 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC18.67■□□□□ 0.58
DEPDC4Q8N2C3 GALNS-213ENST00000569433 723 ntTSL 3 BASIC18.67■□□□□ 0.58
DEPDC4Q8N2C3 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
DEPDC4Q8N2C3 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
DEPDC4Q8N2C3 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC18.67■□□□□ 0.58
DEPDC4Q8N2C3 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
DEPDC4Q8N2C3 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
DEPDC4Q8N2C3 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
DEPDC4Q8N2C3 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
DEPDC4Q8N2C3 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC18.67■□□□□ 0.58
DEPDC4Q8N2C3 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC18.67■□□□□ 0.58
DEPDC4Q8N2C3 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC18.67■□□□□ 0.58
DEPDC4Q8N2C3 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
DEPDC4Q8N2C3 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
DEPDC4Q8N2C3 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
DEPDC4Q8N2C3 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
DEPDC4Q8N2C3 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC18.66■□□□□ 0.58
DEPDC4Q8N2C3 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC18.66■□□□□ 0.58
DEPDC4Q8N2C3 AC116562.4-201ENST00000641316 2276 ntBASIC18.66■□□□□ 0.58
DEPDC4Q8N2C3 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC18.66■□□□□ 0.58
DEPDC4Q8N2C3 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC18.66■□□□□ 0.58
DEPDC4Q8N2C3 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
DEPDC4Q8N2C3 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC18.66■□□□□ 0.58
DEPDC4Q8N2C3 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
DEPDC4Q8N2C3 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
DEPDC4Q8N2C3 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC18.66■□□□□ 0.58
DEPDC4Q8N2C3 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC18.66■□□□□ 0.58
DEPDC4Q8N2C3 AC079140.4-201ENST00000507448 529 ntBASIC18.66■□□□□ 0.58
DEPDC4Q8N2C3 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC18.66■□□□□ 0.58
DEPDC4Q8N2C3 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC18.66■□□□□ 0.58
DEPDC4Q8N2C3 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
DEPDC4Q8N2C3 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
DEPDC4Q8N2C3 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
DEPDC4Q8N2C3 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
DEPDC4Q8N2C3 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
DEPDC4Q8N2C3 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC18.66■□□□□ 0.58
DEPDC4Q8N2C3 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC18.66■□□□□ 0.58
DEPDC4Q8N2C3 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
DEPDC4Q8N2C3 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
DEPDC4Q8N2C3 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC18.66■□□□□ 0.58
DEPDC4Q8N2C3 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC18.66■□□□□ 0.58
DEPDC4Q8N2C3 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
DEPDC4Q8N2C3 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
DEPDC4Q8N2C3 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
DEPDC4Q8N2C3 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
DEPDC4Q8N2C3 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
DEPDC4Q8N2C3 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC18.65■□□□□ 0.58
DEPDC4Q8N2C3 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
DEPDC4Q8N2C3 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC18.65■□□□□ 0.58
DEPDC4Q8N2C3 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC18.65■□□□□ 0.58
DEPDC4Q8N2C3 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
DEPDC4Q8N2C3 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
DEPDC4Q8N2C3 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC18.65■□□□□ 0.58
DEPDC4Q8N2C3 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC18.65■□□□□ 0.58
DEPDC4Q8N2C3 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
DEPDC4Q8N2C3 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
DEPDC4Q8N2C3 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
DEPDC4Q8N2C3 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
DEPDC4Q8N2C3 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
DEPDC4Q8N2C3 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
DEPDC4Q8N2C3 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC18.65■□□□□ 0.58
DEPDC4Q8N2C3 AC055733.4-201ENST00000638462 1354 ntBASIC18.65■□□□□ 0.58
DEPDC4Q8N2C3 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC18.65■□□□□ 0.58
DEPDC4Q8N2C3 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms