Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC20.98■□□□□ 0.95
NPAS3Q8IXF0 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
NPAS3Q8IXF0 HTR7P1-201ENST00000538670 1336 ntBASIC20.98■□□□□ 0.95
NPAS3Q8IXF0 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC20.98■□□□□ 0.95
NPAS3Q8IXF0 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC20.98■□□□□ 0.95
NPAS3Q8IXF0 LINC00565-201ENST00000562710 2331 ntBASIC20.98■□□□□ 0.95
NPAS3Q8IXF0 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
NPAS3Q8IXF0 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC20.97■□□□□ 0.95
NPAS3Q8IXF0 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
NPAS3Q8IXF0 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC20.97■□□□□ 0.95
NPAS3Q8IXF0 KRT8P36-201ENST00000489121 1440 ntBASIC20.97■□□□□ 0.95
NPAS3Q8IXF0 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC20.97■□□□□ 0.95
NPAS3Q8IXF0 KRT16P5-201ENST00000455284 522 ntBASIC20.97■□□□□ 0.95
NPAS3Q8IXF0 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC20.97■□□□□ 0.95
NPAS3Q8IXF0 AP003071.4-201ENST00000562276 1284 ntBASIC20.97■□□□□ 0.95
NPAS3Q8IXF0 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
NPAS3Q8IXF0 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC20.97■□□□□ 0.95
NPAS3Q8IXF0 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
NPAS3Q8IXF0 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC20.97■□□□□ 0.95
NPAS3Q8IXF0 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
NPAS3Q8IXF0 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
NPAS3Q8IXF0 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC20.97■□□□□ 0.95
NPAS3Q8IXF0 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
NPAS3Q8IXF0 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC20.96■□□□□ 0.95
NPAS3Q8IXF0 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC20.96■□□□□ 0.95
NPAS3Q8IXF0 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC20.96■□□□□ 0.95
NPAS3Q8IXF0 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC20.96■□□□□ 0.95
NPAS3Q8IXF0 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC20.96■□□□□ 0.95
NPAS3Q8IXF0 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC20.96■□□□□ 0.95
NPAS3Q8IXF0 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
NPAS3Q8IXF0 RPS15-203ENST00000586096 570 ntTSL 2 BASIC20.96■□□□□ 0.95
NPAS3Q8IXF0 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC20.96■□□□□ 0.95
NPAS3Q8IXF0 AL353708.3-201ENST00000610272 989 ntBASIC20.96■□□□□ 0.95
NPAS3Q8IXF0 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
NPAS3Q8IXF0 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
NPAS3Q8IXF0 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
NPAS3Q8IXF0 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC20.96■□□□□ 0.95
NPAS3Q8IXF0 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC20.96■□□□□ 0.95
NPAS3Q8IXF0 NBPF21P-201ENST00000425093 1451 ntBASIC20.95■□□□□ 0.94
NPAS3Q8IXF0 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
NPAS3Q8IXF0 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
NPAS3Q8IXF0 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC20.95■□□□□ 0.94
NPAS3Q8IXF0 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
NPAS3Q8IXF0 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC20.95■□□□□ 0.94
NPAS3Q8IXF0 MAX-217ENST00000557277 728 ntTSL 3 BASIC20.95■□□□□ 0.94
NPAS3Q8IXF0 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
NPAS3Q8IXF0 MIR2861-201ENST00000636310 90 ntBASIC20.95■□□□□ 0.94
NPAS3Q8IXF0 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC20.95■□□□□ 0.94
NPAS3Q8IXF0 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
NPAS3Q8IXF0 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC20.95■□□□□ 0.94
NPAS3Q8IXF0 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
NPAS3Q8IXF0 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
NPAS3Q8IXF0 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC20.95■□□□□ 0.94
NPAS3Q8IXF0 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
NPAS3Q8IXF0 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
NPAS3Q8IXF0 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
NPAS3Q8IXF0 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
NPAS3Q8IXF0 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
NPAS3Q8IXF0 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
NPAS3Q8IXF0 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC20.94■□□□□ 0.94
NPAS3Q8IXF0 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
NPAS3Q8IXF0 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC20.94■□□□□ 0.94
NPAS3Q8IXF0 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC20.94■□□□□ 0.94
NPAS3Q8IXF0 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC20.94■□□□□ 0.94
NPAS3Q8IXF0 RCN1P1-201ENST00000400413 996 ntBASIC20.94■□□□□ 0.94
NPAS3Q8IXF0 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
NPAS3Q8IXF0 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC20.94■□□□□ 0.94
NPAS3Q8IXF0 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
NPAS3Q8IXF0 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC20.94■□□□□ 0.94
NPAS3Q8IXF0 PPOX-219ENST00000544598 813 ntTSL 2 BASIC20.94■□□□□ 0.94
NPAS3Q8IXF0 CD177P1-201ENST00000606252 935 ntBASIC20.94■□□□□ 0.94
NPAS3Q8IXF0 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC20.94■□□□□ 0.94
NPAS3Q8IXF0 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
NPAS3Q8IXF0 AC244015.2-201ENST00000616358 1861 ntBASIC20.94■□□□□ 0.94
NPAS3Q8IXF0 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
NPAS3Q8IXF0 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
NPAS3Q8IXF0 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC20.94■□□□□ 0.94
NPAS3Q8IXF0 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
NPAS3Q8IXF0 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC20.93■□□□□ 0.94
NPAS3Q8IXF0 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
NPAS3Q8IXF0 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC20.93■□□□□ 0.94
NPAS3Q8IXF0 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC20.93■□□□□ 0.94
NPAS3Q8IXF0 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
NPAS3Q8IXF0 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
NPAS3Q8IXF0 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC20.93■□□□□ 0.94
NPAS3Q8IXF0 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
NPAS3Q8IXF0 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
NPAS3Q8IXF0 AL353807.1-201ENST00000427475 662 ntBASIC20.93■□□□□ 0.94
NPAS3Q8IXF0 AL355355.2-201ENST00000442321 338 ntBASIC20.93■□□□□ 0.94
NPAS3Q8IXF0 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
NPAS3Q8IXF0 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
NPAS3Q8IXF0 F2R-202ENST00000505600 442 ntTSL 2 BASIC20.93■□□□□ 0.94
NPAS3Q8IXF0 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC20.93■□□□□ 0.94
NPAS3Q8IXF0 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC20.93■□□□□ 0.94
NPAS3Q8IXF0 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC20.93■□□□□ 0.94
NPAS3Q8IXF0 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC20.93■□□□□ 0.94
NPAS3Q8IXF0 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
NPAS3Q8IXF0 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
NPAS3Q8IXF0 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
NPAS3Q8IXF0 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC20.93■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 24.5 ms