Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC14.57□□□□□ -0.08
COL7A1Q02388 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
COL7A1Q02388 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
COL7A1Q02388 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
COL7A1Q02388 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC14.56□□□□□ -0.08
COL7A1Q02388 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
COL7A1Q02388 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
COL7A1Q02388 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
COL7A1Q02388 PGM5P4-201ENST00000421970 445 ntBASIC14.56□□□□□ -0.08
COL7A1Q02388 SLC25A1P4-201ENST00000567977 778 ntBASIC14.56□□□□□ -0.08
COL7A1Q02388 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
COL7A1Q02388 DBP-204ENST00000599385 709 ntTSL 3 BASIC14.56□□□□□ -0.08
COL7A1Q02388 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC14.56□□□□□ -0.08
COL7A1Q02388 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
COL7A1Q02388 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC14.56□□□□□ -0.08
COL7A1Q02388 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC14.56□□□□□ -0.08
COL7A1Q02388 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
COL7A1Q02388 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
COL7A1Q02388 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC14.56□□□□□ -0.08
COL7A1Q02388 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC14.56□□□□□ -0.08
COL7A1Q02388 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
COL7A1Q02388 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
COL7A1Q02388 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
COL7A1Q02388 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC14.56□□□□□ -0.08
COL7A1Q02388 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC14.56□□□□□ -0.08
COL7A1Q02388 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC14.56□□□□□ -0.08
COL7A1Q02388 NAPSB-206ENST00000562112 1266 ntBASIC14.56□□□□□ -0.08
COL7A1Q02388 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC14.56□□□□□ -0.08
COL7A1Q02388 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
COL7A1Q02388 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
COL7A1Q02388 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC14.56□□□□□ -0.08
COL7A1Q02388 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
COL7A1Q02388 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC14.56□□□□□ -0.08
COL7A1Q02388 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC14.56□□□□□ -0.08
COL7A1Q02388 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC14.55□□□□□ -0.08
COL7A1Q02388 ATP5G1P1-201ENST00000448724 379 ntBASIC14.55□□□□□ -0.08
COL7A1Q02388 AL031985.4-201ENST00000642138 673 ntBASIC14.55□□□□□ -0.08
COL7A1Q02388 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
COL7A1Q02388 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
COL7A1Q02388 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
COL7A1Q02388 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC14.55□□□□□ -0.08
COL7A1Q02388 PALM-207ENST00000590161 2137 ntTSL 4 BASIC14.55□□□□□ -0.08
COL7A1Q02388 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC14.55□□□□□ -0.08
COL7A1Q02388 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
COL7A1Q02388 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC14.55□□□□□ -0.08
COL7A1Q02388 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC14.55□□□□□ -0.08
COL7A1Q02388 CLN6-214ENST00000636314 442 ntTSL 3 BASIC14.55□□□□□ -0.08
COL7A1Q02388 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
COL7A1Q02388 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC14.55□□□□□ -0.08
COL7A1Q02388 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
COL7A1Q02388 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
COL7A1Q02388 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC14.55□□□□□ -0.08
COL7A1Q02388 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
COL7A1Q02388 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
COL7A1Q02388 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
COL7A1Q02388 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
COL7A1Q02388 LIN28AP1-201ENST00000429574 405 ntBASIC14.55□□□□□ -0.08
COL7A1Q02388 HCG4P8-203ENST00000443049 980 ntBASIC14.55□□□□□ -0.08
COL7A1Q02388 YBX1P2-201ENST00000489612 999 ntBASIC14.55□□□□□ -0.08
COL7A1Q02388 F2R-202ENST00000505600 442 ntTSL 2 BASIC14.55□□□□□ -0.08
COL7A1Q02388 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
COL7A1Q02388 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
COL7A1Q02388 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
COL7A1Q02388 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
COL7A1Q02388 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
COL7A1Q02388 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
COL7A1Q02388 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
COL7A1Q02388 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC14.54□□□□□ -0.08
COL7A1Q02388 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC14.54□□□□□ -0.08
COL7A1Q02388 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC14.54□□□□□ -0.08
COL7A1Q02388 FAM207BP-201ENST00000447172 505 ntBASIC14.54□□□□□ -0.08
COL7A1Q02388 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC14.54□□□□□ -0.08
COL7A1Q02388 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC14.54□□□□□ -0.08
COL7A1Q02388 C2orf69P3-201ENST00000565542 1120 ntBASIC14.54□□□□□ -0.08
COL7A1Q02388 AP005242.2-201ENST00000580065 1175 ntBASIC14.54□□□□□ -0.08
COL7A1Q02388 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC14.54□□□□□ -0.08
COL7A1Q02388 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
COL7A1Q02388 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC14.54□□□□□ -0.08
COL7A1Q02388 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC14.54□□□□□ -0.08
COL7A1Q02388 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
COL7A1Q02388 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
COL7A1Q02388 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC14.54□□□□□ -0.08
COL7A1Q02388 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
COL7A1Q02388 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
COL7A1Q02388 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
COL7A1Q02388 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
COL7A1Q02388 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC14.53□□□□□ -0.08
COL7A1Q02388 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC14.53□□□□□ -0.08
COL7A1Q02388 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL7A1Q02388 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
COL7A1Q02388 CD81-212ENST00000526072 1172 ntTSL 5 BASIC14.53□□□□□ -0.08
COL7A1Q02388 AC010203.1-204ENST00000548782 407 ntBASIC14.53□□□□□ -0.08
COL7A1Q02388 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC14.53□□□□□ -0.08
COL7A1Q02388 FAM87A-204ENST00000613235 858 ntBASIC14.53□□□□□ -0.08
COL7A1Q02388 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL7A1Q02388 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL7A1Q02388 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL7A1Q02388 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
COL7A1Q02388 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
COL7A1Q02388 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 45.2 ms