Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
CDX1P47902 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC16.37■□□□□ 0.21
CDX1P47902 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC16.37■□□□□ 0.21
CDX1P47902 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CDX1P47902 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
CDX1P47902 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
CDX1P47902 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CDX1P47902 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
CDX1P47902 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC16.36■□□□□ 0.21
CDX1P47902 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC16.36■□□□□ 0.21
CDX1P47902 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
CDX1P47902 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
CDX1P47902 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CDX1P47902 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
CDX1P47902 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CDX1P47902 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
CDX1P47902 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CDX1P47902 NAA20-201ENST00000310450 920 ntTSL 2 BASIC16.36■□□□□ 0.21
CDX1P47902 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CDX1P47902 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC16.36■□□□□ 0.21
CDX1P47902 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
CDX1P47902 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC16.36■□□□□ 0.21
CDX1P47902 BRI3-207ENST00000539286 699 ntTSL 2 BASIC16.36■□□□□ 0.21
CDX1P47902 DUX4L16-201ENST00000555130 1264 ntBASIC16.36■□□□□ 0.21
CDX1P47902 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC16.36■□□□□ 0.21
CDX1P47902 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC16.36■□□□□ 0.21
CDX1P47902 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC16.36■□□□□ 0.21
CDX1P47902 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CDX1P47902 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CDX1P47902 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
CDX1P47902 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
CDX1P47902 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
CDX1P47902 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
CDX1P47902 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC16.36■□□□□ 0.21
CDX1P47902 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC16.36■□□□□ 0.21
CDX1P47902 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC16.36■□□□□ 0.21
CDX1P47902 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC16.35■□□□□ 0.21
CDX1P47902 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CDX1P47902 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
CDX1P47902 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
CDX1P47902 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC16.35■□□□□ 0.21
CDX1P47902 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
CDX1P47902 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CDX1P47902 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CDX1P47902 TNXA-203ENST00000507684 2038 ntBASIC16.35■□□□□ 0.21
CDX1P47902 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC16.35■□□□□ 0.21
CDX1P47902 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC16.35■□□□□ 0.21
CDX1P47902 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CDX1P47902 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
CDX1P47902 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC16.35■□□□□ 0.21
CDX1P47902 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
CDX1P47902 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
CDX1P47902 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC16.35■□□□□ 0.21
CDX1P47902 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC16.35■□□□□ 0.21
CDX1P47902 TK2-208ENST00000545043 1120 ntTSL 2 BASIC16.35■□□□□ 0.21
CDX1P47902 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
CDX1P47902 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC16.35■□□□□ 0.21
CDX1P47902 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC16.35■□□□□ 0.21
CDX1P47902 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC16.35■□□□□ 0.21
CDX1P47902 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CDX1P47902 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC16.35■□□□□ 0.21
CDX1P47902 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
CDX1P47902 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CDX1P47902 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
CDX1P47902 AC004408.2-201ENST00000623613 2777 ntBASIC16.35■□□□□ 0.21
CDX1P47902 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
CDX1P47902 GABARAPL3-202ENST00000624044 1851 ntBASIC16.35■□□□□ 0.21
CDX1P47902 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
CDX1P47902 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
CDX1P47902 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
CDX1P47902 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
CDX1P47902 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC16.34■□□□□ 0.21
CDX1P47902 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
CDX1P47902 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
CDX1P47902 ID1-201ENST00000376105 1233 ntBASIC16.34■□□□□ 0.21
CDX1P47902 AC007322.1-201ENST00000426983 750 ntBASIC16.34■□□□□ 0.21
CDX1P47902 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC16.34■□□□□ 0.21
CDX1P47902 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
CDX1P47902 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC16.34■□□□□ 0.21
CDX1P47902 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC16.34■□□□□ 0.21
CDX1P47902 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CDX1P47902 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CDX1P47902 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC16.34■□□□□ 0.21
CDX1P47902 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC16.34■□□□□ 0.21
CDX1P47902 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC16.34■□□□□ 0.21
CDX1P47902 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
CDX1P47902 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
CDX1P47902 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
CDX1P47902 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
CDX1P47902 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
CDX1P47902 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC16.33■□□□□ 0.21
CDX1P47902 TUB-203ENST00000534099 1759 ntTSL 2 BASIC16.33■□□□□ 0.21
CDX1P47902 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC16.33■□□□□ 0.21
CDX1P47902 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
CDX1P47902 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.21
CDX1P47902 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
CDX1P47902 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
CDX1P47902 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.21
CDX1P47902 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CDX1P47902 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms