Protein–RNA interactions for Protein: P35398

RORA, Nuclear receptor ROR-alpha, humanhuman

Predictions only

Length 523 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RORAP35398 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
RORAP35398 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC19.17■□□□□ 0.66
RORAP35398 USP48-205ENST00000421625 2818 ntTSL 2 BASIC19.17■□□□□ 0.66
RORAP35398 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
RORAP35398 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC19.17■□□□□ 0.66
RORAP35398 EFS-203ENST00000429593 2610 ntTSL 2 BASIC19.17■□□□□ 0.66
RORAP35398 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
RORAP35398 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC19.17■□□□□ 0.66
RORAP35398 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
RORAP35398 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
RORAP35398 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC19.16■□□□□ 0.66
RORAP35398 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RORAP35398 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
RORAP35398 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
RORAP35398 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
RORAP35398 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RORAP35398 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
RORAP35398 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
RORAP35398 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC19.16■□□□□ 0.66
RORAP35398 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC19.16■□□□□ 0.66
RORAP35398 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC19.16■□□□□ 0.66
RORAP35398 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC19.16■□□□□ 0.66
RORAP35398 USP36-216ENST00000589424 970 ntTSL 5 BASIC19.16■□□□□ 0.66
RORAP35398 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
RORAP35398 MIR2861-201ENST00000636310 90 ntBASIC19.16■□□□□ 0.66
RORAP35398 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RORAP35398 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
RORAP35398 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RORAP35398 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC19.16■□□□□ 0.66
RORAP35398 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
RORAP35398 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RORAP35398 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RORAP35398 KRT8P36-201ENST00000489121 1440 ntBASIC19.16■□□□□ 0.66
RORAP35398 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
RORAP35398 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
RORAP35398 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
RORAP35398 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
RORAP35398 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
RORAP35398 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
RORAP35398 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
RORAP35398 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
RORAP35398 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
RORAP35398 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
RORAP35398 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC19.15■□□□□ 0.66
RORAP35398 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
RORAP35398 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC19.15■□□□□ 0.66
RORAP35398 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC19.15■□□□□ 0.66
RORAP35398 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC19.15■□□□□ 0.66
RORAP35398 AC120498.8-201ENST00000614275 531 ntBASIC19.15■□□□□ 0.66
RORAP35398 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC19.15■□□□□ 0.66
RORAP35398 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
RORAP35398 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
RORAP35398 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
RORAP35398 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
RORAP35398 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC19.15■□□□□ 0.66
RORAP35398 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC19.15■□□□□ 0.66
RORAP35398 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
RORAP35398 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
RORAP35398 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
RORAP35398 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
RORAP35398 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC19.14■□□□□ 0.66
RORAP35398 STK25-205ENST00000405883 1904 ntTSL 2 BASIC19.14■□□□□ 0.65
RORAP35398 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
RORAP35398 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC19.14■□□□□ 0.65
RORAP35398 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
RORAP35398 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
RORAP35398 ABHD17AP6-201ENST00000458502 1044 ntBASIC19.14■□□□□ 0.65
RORAP35398 RPS2P4-201ENST00000476944 856 ntBASIC19.14■□□□□ 0.65
RORAP35398 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC19.14■□□□□ 0.65
RORAP35398 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC19.14■□□□□ 0.65
RORAP35398 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC19.14■□□□□ 0.65
RORAP35398 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
RORAP35398 AC006557.6-201ENST00000623071 864 ntBASIC19.14■□□□□ 0.65
RORAP35398 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC19.14■□□□□ 0.65
RORAP35398 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC19.14■□□□□ 0.65
RORAP35398 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
RORAP35398 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
RORAP35398 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
RORAP35398 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC19.14■□□□□ 0.65
RORAP35398 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
RORAP35398 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
RORAP35398 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
RORAP35398 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
RORAP35398 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC19.13■□□□□ 0.65
RORAP35398 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC19.13■□□□□ 0.65
RORAP35398 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
RORAP35398 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
RORAP35398 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
RORAP35398 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
RORAP35398 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
RORAP35398 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
RORAP35398 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC19.13■□□□□ 0.65
RORAP35398 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC19.13■□□□□ 0.65
RORAP35398 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC19.13■□□□□ 0.65
RORAP35398 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
RORAP35398 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC19.13■□□□□ 0.65
RORAP35398 AC008550.1-201ENST00000511500 884 ntBASIC19.13■□□□□ 0.65
RORAP35398 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
RORAP35398 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC19.13■□□□□ 0.65
RORAP35398 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC19.13■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 35.8 ms