Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
COL8A1P27658 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
COL8A1P27658 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
COL8A1P27658 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
COL8A1P27658 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC17.65■□□□□ 0.42
COL8A1P27658 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC17.65■□□□□ 0.42
COL8A1P27658 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC17.65■□□□□ 0.42
COL8A1P27658 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL8A1P27658 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
COL8A1P27658 AC026471.6-201ENST00000622954 1905 ntBASIC17.64■□□□□ 0.42
COL8A1P27658 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.42
COL8A1P27658 ME2-208ENST00000638937 2471 ntTSL 5 BASIC17.64■□□□□ 0.42
COL8A1P27658 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
COL8A1P27658 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
COL8A1P27658 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
COL8A1P27658 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
COL8A1P27658 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
COL8A1P27658 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC17.64■□□□□ 0.41
COL8A1P27658 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC17.64■□□□□ 0.41
COL8A1P27658 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
COL8A1P27658 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
COL8A1P27658 DUSP5P1-201ENST00000441325 1139 ntBASIC17.64■□□□□ 0.41
COL8A1P27658 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
COL8A1P27658 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
COL8A1P27658 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
COL8A1P27658 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC17.64■□□□□ 0.41
COL8A1P27658 LTBR-211ENST00000543190 785 ntTSL 3 BASIC17.64■□□□□ 0.41
COL8A1P27658 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC17.64■□□□□ 0.41
COL8A1P27658 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC17.64■□□□□ 0.41
COL8A1P27658 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
COL8A1P27658 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC17.64■□□□□ 0.41
COL8A1P27658 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
COL8A1P27658 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
COL8A1P27658 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
COL8A1P27658 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
COL8A1P27658 AC027702.1-201ENST00000563810 1770 ntBASIC17.63■□□□□ 0.41
COL8A1P27658 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC17.63■□□□□ 0.41
COL8A1P27658 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
COL8A1P27658 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
COL8A1P27658 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
COL8A1P27658 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
COL8A1P27658 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
COL8A1P27658 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
COL8A1P27658 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
COL8A1P27658 IPPK-202ENST00000375522 882 ntTSL 3 BASIC17.63■□□□□ 0.41
COL8A1P27658 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC17.63■□□□□ 0.41
COL8A1P27658 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
COL8A1P27658 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC17.63■□□□□ 0.41
COL8A1P27658 ECEL1P2-202ENST00000465689 757 ntBASIC17.63■□□□□ 0.41
COL8A1P27658 PP7080-204ENST00000510714 601 ntTSL 3 BASIC17.63■□□□□ 0.41
COL8A1P27658 AC022616.7-201ENST00000525383 220 ntBASIC17.63■□□□□ 0.41
COL8A1P27658 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC17.63■□□□□ 0.41
COL8A1P27658 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC17.63■□□□□ 0.41
COL8A1P27658 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC17.63■□□□□ 0.41
COL8A1P27658 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC17.63■□□□□ 0.41
COL8A1P27658 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
COL8A1P27658 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
COL8A1P27658 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC17.63■□□□□ 0.41
COL8A1P27658 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC17.63■□□□□ 0.41
COL8A1P27658 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
COL8A1P27658 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
COL8A1P27658 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC17.63■□□□□ 0.41
COL8A1P27658 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC17.63■□□□□ 0.41
COL8A1P27658 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
COL8A1P27658 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
COL8A1P27658 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
COL8A1P27658 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
COL8A1P27658 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
COL8A1P27658 LGALS8-AS1-201ENST00000487567 1457 ntBASIC17.63■□□□□ 0.41
COL8A1P27658 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
COL8A1P27658 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC17.62■□□□□ 0.41
COL8A1P27658 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
COL8A1P27658 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC17.62■□□□□ 0.41
COL8A1P27658 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
COL8A1P27658 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
COL8A1P27658 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
COL8A1P27658 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
COL8A1P27658 COPE-203ENST00000351079 907 ntTSL 2 BASIC17.62■□□□□ 0.41
COL8A1P27658 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC17.62■□□□□ 0.41
COL8A1P27658 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC17.62■□□□□ 0.41
COL8A1P27658 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
COL8A1P27658 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC17.62■□□□□ 0.41
COL8A1P27658 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC17.62■□□□□ 0.41
COL8A1P27658 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC17.62■□□□□ 0.41
COL8A1P27658 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
COL8A1P27658 AL121829.2-201ENST00000620908 328 ntBASIC17.62■□□□□ 0.41
COL8A1P27658 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC17.62■□□□□ 0.41
COL8A1P27658 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC17.62■□□□□ 0.41
COL8A1P27658 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
COL8A1P27658 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
COL8A1P27658 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
COL8A1P27658 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
COL8A1P27658 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC17.61■□□□□ 0.41
COL8A1P27658 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
COL8A1P27658 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
COL8A1P27658 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
COL8A1P27658 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
COL8A1P27658 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
COL8A1P27658 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC17.61■□□□□ 0.41
COL8A1P27658 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC17.61■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms