Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC19.22■□□□□ 0.67
SDC1P18827 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SDC1P18827 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
SDC1P18827 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
SDC1P18827 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SDC1P18827 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SDC1P18827 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC19.22■□□□□ 0.67
SDC1P18827 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC19.22■□□□□ 0.67
SDC1P18827 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SDC1P18827 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
SDC1P18827 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC19.22■□□□□ 0.67
SDC1P18827 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC19.22■□□□□ 0.67
SDC1P18827 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SDC1P18827 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC19.22■□□□□ 0.67
SDC1P18827 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
SDC1P18827 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
SDC1P18827 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
SDC1P18827 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
SDC1P18827 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC19.22■□□□□ 0.67
SDC1P18827 PBX1-209ENST00000485769 834 ntTSL 2 BASIC19.22■□□□□ 0.67
SDC1P18827 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC19.22■□□□□ 0.67
SDC1P18827 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
SDC1P18827 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC19.22■□□□□ 0.67
SDC1P18827 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC19.22■□□□□ 0.67
SDC1P18827 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC19.22■□□□□ 0.67
SDC1P18827 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
SDC1P18827 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SDC1P18827 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SDC1P18827 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
SDC1P18827 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
SDC1P18827 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
SDC1P18827 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SDC1P18827 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SDC1P18827 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC19.21■□□□□ 0.67
SDC1P18827 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SDC1P18827 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC19.21■□□□□ 0.67
SDC1P18827 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC19.21■□□□□ 0.67
SDC1P18827 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SDC1P18827 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SDC1P18827 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SDC1P18827 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC19.21■□□□□ 0.67
SDC1P18827 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SDC1P18827 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC19.21■□□□□ 0.67
SDC1P18827 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC19.21■□□□□ 0.67
SDC1P18827 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC19.21■□□□□ 0.67
SDC1P18827 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
SDC1P18827 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SDC1P18827 AC007952.6-201ENST00000573168 2673 ntBASIC19.2■□□□□ 0.66
SDC1P18827 AC003957.1-201ENST00000625108 2673 ntBASIC19.2■□□□□ 0.66
SDC1P18827 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SDC1P18827 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SDC1P18827 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
SDC1P18827 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SDC1P18827 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC19.2■□□□□ 0.66
SDC1P18827 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
SDC1P18827 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SDC1P18827 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC19.2■□□□□ 0.66
SDC1P18827 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SDC1P18827 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC19.2■□□□□ 0.66
SDC1P18827 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC19.2■□□□□ 0.66
SDC1P18827 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC19.2■□□□□ 0.66
SDC1P18827 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SDC1P18827 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC19.2■□□□□ 0.66
SDC1P18827 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC19.2■□□□□ 0.66
SDC1P18827 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
SDC1P18827 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SDC1P18827 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC19.2■□□□□ 0.66
SDC1P18827 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SDC1P18827 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC19.19■□□□□ 0.66
SDC1P18827 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SDC1P18827 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC19.19■□□□□ 0.66
SDC1P18827 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SDC1P18827 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SDC1P18827 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC19.19■□□□□ 0.66
SDC1P18827 AC026271.2-201ENST00000428091 497 ntBASIC19.19■□□□□ 0.66
SDC1P18827 GXYLT1P2-201ENST00000433312 1230 ntBASIC19.19■□□□□ 0.66
SDC1P18827 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC19.19■□□□□ 0.66
SDC1P18827 CNN2P6-201ENST00000439038 900 ntBASIC19.19■□□□□ 0.66
SDC1P18827 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SDC1P18827 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
SDC1P18827 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC19.19■□□□□ 0.66
SDC1P18827 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC19.19■□□□□ 0.66
SDC1P18827 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SDC1P18827 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC19.19■□□□□ 0.66
SDC1P18827 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SDC1P18827 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SDC1P18827 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SDC1P18827 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC19.18■□□□□ 0.66
SDC1P18827 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SDC1P18827 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC19.18■□□□□ 0.66
SDC1P18827 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SDC1P18827 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SDC1P18827 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
SDC1P18827 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC19.18■□□□□ 0.66
SDC1P18827 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
SDC1P18827 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SDC1P18827 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SDC1P18827 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
SDC1P18827 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC19.18■□□□□ 0.66
SDC1P18827 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC19.18■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms