Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
SIX3O95343 AL691432.2-201ENST00000607222 2038 ntBASIC19.71■□□□□ 0.75
SIX3O95343 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SIX3O95343 STK25-205ENST00000405883 1904 ntTSL 2 BASIC19.71■□□□□ 0.75
SIX3O95343 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SIX3O95343 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
SIX3O95343 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC19.71■□□□□ 0.75
SIX3O95343 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
SIX3O95343 AC137761.2-201ENST00000561729 223 ntBASIC19.71■□□□□ 0.75
SIX3O95343 AC145350.3-201ENST00000569033 163 ntBASIC19.71■□□□□ 0.75
SIX3O95343 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC19.71■□□□□ 0.75
SIX3O95343 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
SIX3O95343 AL356652.1-201ENST00000615962 565 ntBASIC19.71■□□□□ 0.75
SIX3O95343 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC19.71■□□□□ 0.75
SIX3O95343 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
SIX3O95343 CYP21A1P-202ENST00000354927 1481 ntBASIC19.71■□□□□ 0.75
SIX3O95343 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
SIX3O95343 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
SIX3O95343 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SIX3O95343 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC19.71■□□□□ 0.75
SIX3O95343 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
SIX3O95343 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC19.71■□□□□ 0.75
SIX3O95343 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
SIX3O95343 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
SIX3O95343 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
SIX3O95343 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC19.71■□□□□ 0.74
SIX3O95343 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
SIX3O95343 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
SIX3O95343 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC19.7■□□□□ 0.74
SIX3O95343 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SIX3O95343 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
SIX3O95343 AC087633.2-202ENST00000565166 1439 ntBASIC19.7■□□□□ 0.74
SIX3O95343 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SIX3O95343 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC19.7■□□□□ 0.74
SIX3O95343 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC19.7■□□□□ 0.74
SIX3O95343 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
SIX3O95343 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC19.7■□□□□ 0.74
SIX3O95343 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC19.7■□□□□ 0.74
SIX3O95343 PLLP-204ENST00000569059 665 ntTSL 3 BASIC19.7■□□□□ 0.74
SIX3O95343 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
SIX3O95343 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC19.7■□□□□ 0.74
SIX3O95343 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC19.7■□□□□ 0.74
SIX3O95343 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC19.7■□□□□ 0.74
SIX3O95343 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SIX3O95343 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SIX3O95343 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
SIX3O95343 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SIX3O95343 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SIX3O95343 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SIX3O95343 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
SIX3O95343 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SIX3O95343 H19-201ENST00000411754 1788 ntTSL 5 BASIC19.7■□□□□ 0.74
SIX3O95343 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
SIX3O95343 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC19.69■□□□□ 0.74
SIX3O95343 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC19.69■□□□□ 0.74
SIX3O95343 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
SIX3O95343 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC19.69■□□□□ 0.74
SIX3O95343 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SIX3O95343 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SIX3O95343 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SIX3O95343 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SIX3O95343 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
SIX3O95343 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
SIX3O95343 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC19.69■□□□□ 0.74
SIX3O95343 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC19.69■□□□□ 0.74
SIX3O95343 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC19.69■□□□□ 0.74
SIX3O95343 MFSD11-216ENST00000590393 1141 ntBASIC19.69■□□□□ 0.74
SIX3O95343 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC19.69■□□□□ 0.74
SIX3O95343 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SIX3O95343 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SIX3O95343 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
SIX3O95343 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC19.69■□□□□ 0.74
SIX3O95343 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SIX3O95343 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC19.69■□□□□ 0.74
SIX3O95343 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
SIX3O95343 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SIX3O95343 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC19.68■□□□□ 0.74
SIX3O95343 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
SIX3O95343 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SIX3O95343 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC19.68■□□□□ 0.74
SIX3O95343 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SIX3O95343 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC19.68■□□□□ 0.74
SIX3O95343 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC19.68■□□□□ 0.74
SIX3O95343 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
SIX3O95343 HSCB-202ENST00000398941 955 ntTSL 2 BASIC19.68■□□□□ 0.74
SIX3O95343 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC19.68■□□□□ 0.74
SIX3O95343 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC19.68■□□□□ 0.74
SIX3O95343 AC013268.1-206ENST00000638368 961 ntBASIC19.68■□□□□ 0.74
SIX3O95343 AC112229.1-201ENST00000639295 961 ntBASIC19.68■□□□□ 0.74
SIX3O95343 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SIX3O95343 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC19.68■□□□□ 0.74
SIX3O95343 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC19.68■□□□□ 0.74
SIX3O95343 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SIX3O95343 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
SIX3O95343 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
SIX3O95343 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC19.68■□□□□ 0.74
SIX3O95343 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC19.68■□□□□ 0.74
SIX3O95343 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
SIX3O95343 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
SIX3O95343 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC19.67■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms