Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC19.73■□□□□ 0.75
VPS4BO75351 MIR4651-201ENST00000582622 73 ntBASIC19.73■□□□□ 0.75
VPS4BO75351 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC19.73■□□□□ 0.75
VPS4BO75351 MIR2861-201ENST00000636310 90 ntBASIC19.73■□□□□ 0.75
VPS4BO75351 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
VPS4BO75351 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
VPS4BO75351 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
VPS4BO75351 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
VPS4BO75351 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
VPS4BO75351 AC112907.3-201ENST00000577781 2400 ntBASIC19.73■□□□□ 0.75
VPS4BO75351 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
VPS4BO75351 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
VPS4BO75351 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC19.73■□□□□ 0.75
VPS4BO75351 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
VPS4BO75351 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
VPS4BO75351 PCDHAC2-203ENST00000615316 3011 ntBASIC19.73■□□□□ 0.75
VPS4BO75351 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
VPS4BO75351 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
VPS4BO75351 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
VPS4BO75351 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
VPS4BO75351 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
VPS4BO75351 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
VPS4BO75351 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
VPS4BO75351 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC19.72■□□□□ 0.75
VPS4BO75351 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
VPS4BO75351 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
VPS4BO75351 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC19.72■□□□□ 0.75
VPS4BO75351 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC19.72■□□□□ 0.75
VPS4BO75351 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
VPS4BO75351 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC19.72■□□□□ 0.75
VPS4BO75351 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
VPS4BO75351 AL050303.2-201ENST00000619798 666 ntBASIC19.72■□□□□ 0.75
VPS4BO75351 TFG-210ENST00000620299 1289 ntTSL 5 BASIC19.72■□□□□ 0.75
VPS4BO75351 AC133041.1-202ENST00000642053 222 ntBASIC19.72■□□□□ 0.75
VPS4BO75351 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC19.72■□□□□ 0.75
VPS4BO75351 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
VPS4BO75351 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC19.72■□□□□ 0.75
VPS4BO75351 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC19.72■□□□□ 0.75
VPS4BO75351 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
VPS4BO75351 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
VPS4BO75351 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
VPS4BO75351 TCF3P1-201ENST00000423021 1937 ntBASIC19.71■□□□□ 0.75
VPS4BO75351 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC19.71■□□□□ 0.75
VPS4BO75351 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
VPS4BO75351 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
VPS4BO75351 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
VPS4BO75351 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
VPS4BO75351 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC19.71■□□□□ 0.75
VPS4BO75351 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC19.71■□□□□ 0.75
VPS4BO75351 AC116050.2-201ENST00000612102 1779 ntBASIC19.71■□□□□ 0.75
VPS4BO75351 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
VPS4BO75351 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
VPS4BO75351 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
VPS4BO75351 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
VPS4BO75351 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
VPS4BO75351 SERP1-208ENST00000491660 830 ntTSL 2 BASIC19.71■□□□□ 0.75
VPS4BO75351 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
VPS4BO75351 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC19.71■□□□□ 0.75
VPS4BO75351 OAS3-207ENST00000551007 998 ntTSL 2 BASIC19.71■□□□□ 0.75
VPS4BO75351 SLC7A5P2-201ENST00000553010 536 ntBASIC19.71■□□□□ 0.75
VPS4BO75351 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC19.71■□□□□ 0.75
VPS4BO75351 AL138781.1-201ENST00000566567 1274 ntBASIC19.71■□□□□ 0.75
VPS4BO75351 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
VPS4BO75351 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC19.71■□□□□ 0.75
VPS4BO75351 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
VPS4BO75351 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
VPS4BO75351 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
VPS4BO75351 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC19.7■□□□□ 0.74
VPS4BO75351 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
VPS4BO75351 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
VPS4BO75351 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC19.7■□□□□ 0.74
VPS4BO75351 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC19.7■□□□□ 0.74
VPS4BO75351 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
VPS4BO75351 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
VPS4BO75351 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC19.7■□□□□ 0.74
VPS4BO75351 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
VPS4BO75351 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC19.7■□□□□ 0.74
VPS4BO75351 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC19.7■□□□□ 0.74
VPS4BO75351 TBCB-214ENST00000629269 413 ntTSL 5 BASIC19.7■□□□□ 0.74
VPS4BO75351 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
VPS4BO75351 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
VPS4BO75351 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
VPS4BO75351 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC19.7■□□□□ 0.74
VPS4BO75351 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
VPS4BO75351 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC19.69■□□□□ 0.74
VPS4BO75351 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
VPS4BO75351 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC19.69■□□□□ 0.74
VPS4BO75351 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
VPS4BO75351 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
VPS4BO75351 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
VPS4BO75351 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
VPS4BO75351 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC19.69■□□□□ 0.74
VPS4BO75351 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC19.69■□□□□ 0.74
VPS4BO75351 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
VPS4BO75351 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC19.69■□□□□ 0.74
VPS4BO75351 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
VPS4BO75351 METTL15-202ENST00000403099 795 ntTSL 5 BASIC19.69■□□□□ 0.74
VPS4BO75351 AC069152.1-201ENST00000438030 544 ntBASIC19.69■□□□□ 0.74
VPS4BO75351 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC19.69■□□□□ 0.74
VPS4BO75351 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 45.4 ms