Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 MTDHP2-201ENST00000601468 714 ntBASIC20.22■□□□□ 0.83
SHOX2O60902 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SHOX2O60902 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
SHOX2O60902 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC20.22■□□□□ 0.83
SHOX2O60902 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC20.22■□□□□ 0.83
SHOX2O60902 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
SHOX2O60902 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC20.22■□□□□ 0.83
SHOX2O60902 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SHOX2O60902 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SHOX2O60902 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SHOX2O60902 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC20.21■□□□□ 0.83
SHOX2O60902 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SHOX2O60902 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SHOX2O60902 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
SHOX2O60902 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC20.21■□□□□ 0.83
SHOX2O60902 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC20.21■□□□□ 0.83
SHOX2O60902 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SHOX2O60902 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC20.21■□□□□ 0.83
SHOX2O60902 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SHOX2O60902 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SHOX2O60902 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SHOX2O60902 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
SHOX2O60902 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC20.21■□□□□ 0.83
SHOX2O60902 AC006455.2-201ENST00000429931 906 ntBASIC20.21■□□□□ 0.83
SHOX2O60902 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC20.21■□□□□ 0.83
SHOX2O60902 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
SHOX2O60902 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
SHOX2O60902 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
SHOX2O60902 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC20.21■□□□□ 0.83
SHOX2O60902 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
SHOX2O60902 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SHOX2O60902 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
SHOX2O60902 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
SHOX2O60902 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SHOX2O60902 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SHOX2O60902 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC20.2■□□□□ 0.82
SHOX2O60902 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC20.2■□□□□ 0.82
SHOX2O60902 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC20.2■□□□□ 0.82
SHOX2O60902 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SHOX2O60902 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
SHOX2O60902 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC20.2■□□□□ 0.82
SHOX2O60902 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
SHOX2O60902 TSPY9P-201ENST00000440215 945 ntBASIC20.2■□□□□ 0.82
SHOX2O60902 TSPY11P-201ENST00000442607 1045 ntBASIC20.2■□□□□ 0.82
SHOX2O60902 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
SHOX2O60902 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC20.2■□□□□ 0.82
SHOX2O60902 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SHOX2O60902 MIR4787-201ENST00000607364 84 ntBASIC20.2■□□□□ 0.82
SHOX2O60902 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC20.2■□□□□ 0.82
SHOX2O60902 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
SHOX2O60902 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SHOX2O60902 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
SHOX2O60902 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC20.2■□□□□ 0.82
SHOX2O60902 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC20.2■□□□□ 0.82
SHOX2O60902 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
SHOX2O60902 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC20.2■□□□□ 0.82
SHOX2O60902 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
SHOX2O60902 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC20.19■□□□□ 0.82
SHOX2O60902 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC20.19■□□□□ 0.82
SHOX2O60902 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC20.19■□□□□ 0.82
SHOX2O60902 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC20.19■□□□□ 0.82
SHOX2O60902 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
SHOX2O60902 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SHOX2O60902 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SHOX2O60902 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
SHOX2O60902 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
SHOX2O60902 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SHOX2O60902 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
SHOX2O60902 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC20.19■□□□□ 0.82
SHOX2O60902 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SHOX2O60902 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
SHOX2O60902 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC20.19■□□□□ 0.82
SHOX2O60902 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SHOX2O60902 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC20.18■□□□□ 0.82
SHOX2O60902 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
SHOX2O60902 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
SHOX2O60902 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
SHOX2O60902 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC20.18■□□□□ 0.82
SHOX2O60902 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SHOX2O60902 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
SHOX2O60902 AC239859.2-201ENST00000444165 318 ntBASIC20.18■□□□□ 0.82
SHOX2O60902 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC20.18■□□□□ 0.82
SHOX2O60902 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC20.18■□□□□ 0.82
SHOX2O60902 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
SHOX2O60902 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SHOX2O60902 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SHOX2O60902 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC20.18■□□□□ 0.82
SHOX2O60902 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SHOX2O60902 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
SHOX2O60902 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
SHOX2O60902 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC20.17■□□□□ 0.82
SHOX2O60902 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
SHOX2O60902 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
SHOX2O60902 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC20.17■□□□□ 0.82
SHOX2O60902 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC20.17■□□□□ 0.82
SHOX2O60902 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
SHOX2O60902 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
SHOX2O60902 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC20.17■□□□□ 0.82
SHOX2O60902 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
SHOX2O60902 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 18.6 ms