Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
CACNA1FO60840 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC25.54■■□□□ 1.68
CACNA1FO60840 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC25.54■■□□□ 1.68
CACNA1FO60840 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC25.54■■□□□ 1.68
CACNA1FO60840 FEM1AP1-201ENST00000431297 1995 ntBASIC25.54■■□□□ 1.68
CACNA1FO60840 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC25.54■■□□□ 1.68
CACNA1FO60840 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC25.54■■□□□ 1.68
CACNA1FO60840 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC25.54■■□□□ 1.68
CACNA1FO60840 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC25.54■■□□□ 1.68
CACNA1FO60840 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC25.54■■□□□ 1.68
CACNA1FO60840 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC25.54■■□□□ 1.68
CACNA1FO60840 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC25.54■■□□□ 1.68
CACNA1FO60840 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC25.54■■□□□ 1.68
CACNA1FO60840 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
CACNA1FO60840 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC25.53■■□□□ 1.68
CACNA1FO60840 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC25.53■■□□□ 1.68
CACNA1FO60840 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
CACNA1FO60840 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC25.53■■□□□ 1.68
CACNA1FO60840 FAM201B-201ENST00000458407 597 ntBASIC25.53■■□□□ 1.68
CACNA1FO60840 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
CACNA1FO60840 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC25.53■■□□□ 1.68
CACNA1FO60840 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC25.53■■□□□ 1.68
CACNA1FO60840 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC25.53■■□□□ 1.68
CACNA1FO60840 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
CACNA1FO60840 ESRRAP1-201ENST00000400596 1257 ntBASIC25.53■■□□□ 1.68
CACNA1FO60840 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC25.53■■□□□ 1.68
CACNA1FO60840 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC25.53■■□□□ 1.68
CACNA1FO60840 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC25.53■■□□□ 1.68
CACNA1FO60840 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
CACNA1FO60840 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
CACNA1FO60840 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC25.52■■□□□ 1.68
CACNA1FO60840 AC120498.8-201ENST00000614275 531 ntBASIC25.52■■□□□ 1.68
CACNA1FO60840 AL121829.2-201ENST00000620908 328 ntBASIC25.52■■□□□ 1.68
CACNA1FO60840 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
CACNA1FO60840 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC25.52■■□□□ 1.68
CACNA1FO60840 AC020907.5-201ENST00000624372 1936 ntBASIC25.52■■□□□ 1.68
CACNA1FO60840 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
CACNA1FO60840 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC25.51■■□□□ 1.67
CACNA1FO60840 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
CACNA1FO60840 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC25.51■■□□□ 1.67
CACNA1FO60840 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC25.51■■□□□ 1.67
CACNA1FO60840 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC25.51■■□□□ 1.67
CACNA1FO60840 MAX-217ENST00000557277 728 ntTSL 3 BASIC25.51■■□□□ 1.67
CACNA1FO60840 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC25.51■■□□□ 1.67
CACNA1FO60840 MTDHP1-201ENST00000605323 784 ntBASIC25.51■■□□□ 1.67
CACNA1FO60840 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
CACNA1FO60840 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC25.51■■□□□ 1.67
CACNA1FO60840 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC25.51■■□□□ 1.67
CACNA1FO60840 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
CACNA1FO60840 DET1-207ENST00000564406 2315 ntTSL 2 BASIC25.51■■□□□ 1.67
CACNA1FO60840 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC25.51■■□□□ 1.67
CACNA1FO60840 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC25.51■■□□□ 1.67
CACNA1FO60840 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC25.5■■□□□ 1.67
CACNA1FO60840 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
CACNA1FO60840 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
CACNA1FO60840 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
CACNA1FO60840 ABHD17AP6-201ENST00000458502 1044 ntBASIC25.5■■□□□ 1.67
CACNA1FO60840 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC25.5■■□□□ 1.67
CACNA1FO60840 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC25.5■■□□□ 1.67
CACNA1FO60840 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC25.5■■□□□ 1.67
CACNA1FO60840 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC25.5■■□□□ 1.67
CACNA1FO60840 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
CACNA1FO60840 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC25.5■■□□□ 1.67
CACNA1FO60840 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
CACNA1FO60840 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC25.49■■□□□ 1.67
CACNA1FO60840 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
CACNA1FO60840 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC25.49■■□□□ 1.67
CACNA1FO60840 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC25.49■■□□□ 1.67
CACNA1FO60840 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC25.49■■□□□ 1.67
CACNA1FO60840 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC25.49■■□□□ 1.67
CACNA1FO60840 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
CACNA1FO60840 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC25.49■■□□□ 1.67
CACNA1FO60840 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC25.49■■□□□ 1.67
CACNA1FO60840 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
CACNA1FO60840 AC133681.1-201ENST00000465482 601 ntBASIC25.49■■□□□ 1.67
CACNA1FO60840 RPS2P52-201ENST00000469610 820 ntBASIC25.49■■□□□ 1.67
CACNA1FO60840 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC25.49■■□□□ 1.67
CACNA1FO60840 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC25.48■■□□□ 1.67
CACNA1FO60840 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC25.48■■□□□ 1.67
CACNA1FO60840 AC124283.5-201ENST00000624661 1809 ntBASIC25.48■■□□□ 1.67
CACNA1FO60840 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
CACNA1FO60840 PRORSD1P-201ENST00000295112 541 ntBASIC25.48■■□□□ 1.67
CACNA1FO60840 ISG20-202ENST00000379224 540 ntTSL 3 BASIC25.48■■□□□ 1.67
CACNA1FO60840 GCSHP5-201ENST00000443090 522 ntBASIC25.48■■□□□ 1.67
CACNA1FO60840 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC25.48■■□□□ 1.67
CACNA1FO60840 RNF121-214ENST00000533380 870 ntTSL 3 BASIC25.48■■□□□ 1.67
CACNA1FO60840 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC25.48■■□□□ 1.67
CACNA1FO60840 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC25.48■■□□□ 1.67
CACNA1FO60840 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC25.48■■□□□ 1.67
CACNA1FO60840 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC25.48■■□□□ 1.67
CACNA1FO60840 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
CACNA1FO60840 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
CACNA1FO60840 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
CACNA1FO60840 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC25.48■■□□□ 1.67
CACNA1FO60840 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
CACNA1FO60840 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC25.47■■□□□ 1.67
CACNA1FO60840 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC25.47■■□□□ 1.67
CACNA1FO60840 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
CACNA1FO60840 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
CACNA1FO60840 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC25.47■■□□□ 1.67
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms