Protein–RNA interactions for Protein: Q9Y5B0

CTDP1, RNA polymerase II subunit A C-terminal domain phosphatase, humanhuman

Predicted RBP Predictions only

Length 961 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDP1Q9Y5B0 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC23.4■■□□□ 1.34
CTDP1Q9Y5B0 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC23.4■■□□□ 1.34
CTDP1Q9Y5B0 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC23.39■■□□□ 1.34
CTDP1Q9Y5B0 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC23.39■■□□□ 1.34
CTDP1Q9Y5B0 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.34
CTDP1Q9Y5B0 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC23.39■■□□□ 1.34
CTDP1Q9Y5B0 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.34
CTDP1Q9Y5B0 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC23.39■■□□□ 1.34
CTDP1Q9Y5B0 AL024507.2-201ENST00000606070 2574 ntBASIC23.39■■□□□ 1.34
CTDP1Q9Y5B0 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC23.39■■□□□ 1.33
CTDP1Q9Y5B0 ISG20-202ENST00000379224 540 ntTSL 3 BASIC23.39■■□□□ 1.33
CTDP1Q9Y5B0 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC23.39■■□□□ 1.33
CTDP1Q9Y5B0 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC23.39■■□□□ 1.33
CTDP1Q9Y5B0 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC23.39■■□□□ 1.33
CTDP1Q9Y5B0 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC23.39■■□□□ 1.33
CTDP1Q9Y5B0 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC23.39■■□□□ 1.33
CTDP1Q9Y5B0 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC23.39■■□□□ 1.33
CTDP1Q9Y5B0 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
CTDP1Q9Y5B0 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC23.39■■□□□ 1.33
CTDP1Q9Y5B0 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC23.39■■□□□ 1.33
CTDP1Q9Y5B0 AL049796.1-201ENST00000565336 1766 ntBASIC23.39■■□□□ 1.33
CTDP1Q9Y5B0 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC23.39■■□□□ 1.33
CTDP1Q9Y5B0 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC23.39■■□□□ 1.33
CTDP1Q9Y5B0 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
CTDP1Q9Y5B0 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
CTDP1Q9Y5B0 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC23.38■■□□□ 1.33
CTDP1Q9Y5B0 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC23.38■■□□□ 1.33
CTDP1Q9Y5B0 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC23.38■■□□□ 1.33
CTDP1Q9Y5B0 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
CTDP1Q9Y5B0 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC23.38■■□□□ 1.33
CTDP1Q9Y5B0 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
CTDP1Q9Y5B0 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
CTDP1Q9Y5B0 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC23.38■■□□□ 1.33
CTDP1Q9Y5B0 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC23.38■■□□□ 1.33
CTDP1Q9Y5B0 AC239809.2-201ENST00000415381 517 ntBASIC23.38■■□□□ 1.33
CTDP1Q9Y5B0 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC23.38■■□□□ 1.33
CTDP1Q9Y5B0 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
CTDP1Q9Y5B0 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC23.38■■□□□ 1.33
CTDP1Q9Y5B0 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC23.38■■□□□ 1.33
CTDP1Q9Y5B0 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC23.38■■□□□ 1.33
CTDP1Q9Y5B0 KLF2-202ENST00000592003 564 ntTSL 3 BASIC23.38■■□□□ 1.33
CTDP1Q9Y5B0 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC23.38■■□□□ 1.33
CTDP1Q9Y5B0 MIR2861-201ENST00000636310 90 ntBASIC23.38■■□□□ 1.33
CTDP1Q9Y5B0 AL023875.1-201ENST00000640777 796 ntBASIC23.38■■□□□ 1.33
CTDP1Q9Y5B0 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
CTDP1Q9Y5B0 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC23.38■■□□□ 1.33
CTDP1Q9Y5B0 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
CTDP1Q9Y5B0 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
CTDP1Q9Y5B0 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
CTDP1Q9Y5B0 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
CTDP1Q9Y5B0 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC23.37■■□□□ 1.33
CTDP1Q9Y5B0 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
CTDP1Q9Y5B0 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC23.37■■□□□ 1.33
CTDP1Q9Y5B0 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC23.37■■□□□ 1.33
CTDP1Q9Y5B0 MTDHP1-201ENST00000605323 784 ntBASIC23.37■■□□□ 1.33
CTDP1Q9Y5B0 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC23.37■■□□□ 1.33
CTDP1Q9Y5B0 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
CTDP1Q9Y5B0 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
CTDP1Q9Y5B0 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
CTDP1Q9Y5B0 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
CTDP1Q9Y5B0 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC23.36■■□□□ 1.33
CTDP1Q9Y5B0 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
CTDP1Q9Y5B0 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC23.36■■□□□ 1.33
CTDP1Q9Y5B0 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
CTDP1Q9Y5B0 KRT8P36-201ENST00000489121 1440 ntBASIC23.36■■□□□ 1.33
CTDP1Q9Y5B0 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
CTDP1Q9Y5B0 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
CTDP1Q9Y5B0 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC23.36■■□□□ 1.33
CTDP1Q9Y5B0 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC23.36■■□□□ 1.33
CTDP1Q9Y5B0 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
CTDP1Q9Y5B0 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC23.36■■□□□ 1.33
CTDP1Q9Y5B0 LY6E-205ENST00000519611 635 ntTSL 3 BASIC23.36■■□□□ 1.33
CTDP1Q9Y5B0 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC23.36■■□□□ 1.33
CTDP1Q9Y5B0 PRKY-204ENST00000533551 1019 ntBASIC23.36■■□□□ 1.33
CTDP1Q9Y5B0 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC23.36■■□□□ 1.33
CTDP1Q9Y5B0 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC23.36■■□□□ 1.33
CTDP1Q9Y5B0 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC23.36■■□□□ 1.33
CTDP1Q9Y5B0 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC23.36■■□□□ 1.33
CTDP1Q9Y5B0 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC23.36■■□□□ 1.33
CTDP1Q9Y5B0 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC23.36■■□□□ 1.33
CTDP1Q9Y5B0 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC23.36■■□□□ 1.33
CTDP1Q9Y5B0 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC23.36■■□□□ 1.33
CTDP1Q9Y5B0 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC23.36■■□□□ 1.33
CTDP1Q9Y5B0 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC23.36■■□□□ 1.33
CTDP1Q9Y5B0 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC23.36■■□□□ 1.33
CTDP1Q9Y5B0 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
CTDP1Q9Y5B0 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
CTDP1Q9Y5B0 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
CTDP1Q9Y5B0 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC23.35■■□□□ 1.33
CTDP1Q9Y5B0 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC23.35■■□□□ 1.33
CTDP1Q9Y5B0 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC23.35■■□□□ 1.33
CTDP1Q9Y5B0 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC23.35■■□□□ 1.33
CTDP1Q9Y5B0 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC23.35■■□□□ 1.33
CTDP1Q9Y5B0 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC23.35■■□□□ 1.33
CTDP1Q9Y5B0 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
CTDP1Q9Y5B0 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC23.35■■□□□ 1.33
CTDP1Q9Y5B0 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
CTDP1Q9Y5B0 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC23.35■■□□□ 1.33
CTDP1Q9Y5B0 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
CTDP1Q9Y5B0 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC23.35■■□□□ 1.33
Retrieved 100 of 98,524 protein–RNA pairs in 48.8 ms