Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
FOXA2Q9Y261 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC16.34■□□□□ 0.21
FOXA2Q9Y261 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC16.34■□□□□ 0.21
FOXA2Q9Y261 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
FOXA2Q9Y261 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC16.34■□□□□ 0.21
FOXA2Q9Y261 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC16.33■□□□□ 0.21
FOXA2Q9Y261 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC16.33■□□□□ 0.21
FOXA2Q9Y261 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC16.33■□□□□ 0.21
FOXA2Q9Y261 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC16.33■□□□□ 0.21
FOXA2Q9Y261 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
FOXA2Q9Y261 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
FOXA2Q9Y261 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
FOXA2Q9Y261 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.21
FOXA2Q9Y261 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
FOXA2Q9Y261 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.21
FOXA2Q9Y261 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
FOXA2Q9Y261 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
FOXA2Q9Y261 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC16.33■□□□□ 0.2
FOXA2Q9Y261 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC16.33■□□□□ 0.2
FOXA2Q9Y261 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC16.33■□□□□ 0.2
FOXA2Q9Y261 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC16.33■□□□□ 0.2
FOXA2Q9Y261 AC243732.1-201ENST00000612648 864 ntBASIC16.33■□□□□ 0.2
FOXA2Q9Y261 FGF8-207ENST00000618991 856 ntTSL 3 BASIC16.33■□□□□ 0.2
FOXA2Q9Y261 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
FOXA2Q9Y261 AC092437.1-201ENST00000624794 1048 ntBASIC16.33■□□□□ 0.2
FOXA2Q9Y261 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC16.33■□□□□ 0.2
FOXA2Q9Y261 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
FOXA2Q9Y261 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
FOXA2Q9Y261 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
FOXA2Q9Y261 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC16.33■□□□□ 0.2
FOXA2Q9Y261 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
FOXA2Q9Y261 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
FOXA2Q9Y261 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
FOXA2Q9Y261 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
FOXA2Q9Y261 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC16.33■□□□□ 0.2
FOXA2Q9Y261 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC16.33■□□□□ 0.2
FOXA2Q9Y261 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC16.32■□□□□ 0.2
FOXA2Q9Y261 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
FOXA2Q9Y261 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
FOXA2Q9Y261 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
FOXA2Q9Y261 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
FOXA2Q9Y261 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC16.32■□□□□ 0.2
FOXA2Q9Y261 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
FOXA2Q9Y261 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
FOXA2Q9Y261 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
FOXA2Q9Y261 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
FOXA2Q9Y261 METTL26-203ENST00000397664 604 ntTSL 2 BASIC16.32■□□□□ 0.2
FOXA2Q9Y261 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
FOXA2Q9Y261 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
FOXA2Q9Y261 AC004911.1-201ENST00000416316 871 ntBASIC16.32■□□□□ 0.2
FOXA2Q9Y261 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
FOXA2Q9Y261 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC16.32■□□□□ 0.2
FOXA2Q9Y261 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
FOXA2Q9Y261 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC16.32■□□□□ 0.2
FOXA2Q9Y261 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC16.32■□□□□ 0.2
FOXA2Q9Y261 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC16.32■□□□□ 0.2
FOXA2Q9Y261 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC16.32■□□□□ 0.2
FOXA2Q9Y261 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
FOXA2Q9Y261 RBM17P2-201ENST00000616397 1405 ntBASIC16.32■□□□□ 0.2
FOXA2Q9Y261 MDK-213ENST00000617138 635 ntTSL 2 BASIC16.32■□□□□ 0.2
FOXA2Q9Y261 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
FOXA2Q9Y261 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC16.32■□□□□ 0.2
FOXA2Q9Y261 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
FOXA2Q9Y261 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
FOXA2Q9Y261 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
FOXA2Q9Y261 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC16.31■□□□□ 0.2
FOXA2Q9Y261 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
FOXA2Q9Y261 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
FOXA2Q9Y261 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC16.31■□□□□ 0.2
FOXA2Q9Y261 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
FOXA2Q9Y261 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC16.31■□□□□ 0.2
FOXA2Q9Y261 TERF1P5-201ENST00000477545 1207 ntBASIC16.31■□□□□ 0.2
FOXA2Q9Y261 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC16.31■□□□□ 0.2
FOXA2Q9Y261 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
FOXA2Q9Y261 AC013268.1-206ENST00000638368 961 ntBASIC16.31■□□□□ 0.2
FOXA2Q9Y261 AC112229.1-201ENST00000639295 961 ntBASIC16.31■□□□□ 0.2
FOXA2Q9Y261 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
FOXA2Q9Y261 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
FOXA2Q9Y261 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
FOXA2Q9Y261 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
FOXA2Q9Y261 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC16.31■□□□□ 0.2
FOXA2Q9Y261 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
FOXA2Q9Y261 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC16.31■□□□□ 0.2
FOXA2Q9Y261 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
FOXA2Q9Y261 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
FOXA2Q9Y261 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC16.31■□□□□ 0.2
FOXA2Q9Y261 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
FOXA2Q9Y261 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC16.3■□□□□ 0.2
FOXA2Q9Y261 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
FOXA2Q9Y261 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC16.3■□□□□ 0.2
FOXA2Q9Y261 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
FOXA2Q9Y261 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC16.3■□□□□ 0.2
FOXA2Q9Y261 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
FOXA2Q9Y261 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
FOXA2Q9Y261 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
FOXA2Q9Y261 BMP1-204ENST00000397814 836 ntTSL 4 BASIC16.3■□□□□ 0.2
FOXA2Q9Y261 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC16.3■□□□□ 0.2
FOXA2Q9Y261 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
FOXA2Q9Y261 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
FOXA2Q9Y261 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC16.3■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 15.6 ms