Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
VPS4AQ9UN37 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
VPS4AQ9UN37 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
VPS4AQ9UN37 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC19.5■□□□□ 0.71
VPS4AQ9UN37 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC19.5■□□□□ 0.71
VPS4AQ9UN37 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC19.5■□□□□ 0.71
VPS4AQ9UN37 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
VPS4AQ9UN37 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
VPS4AQ9UN37 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC19.49■□□□□ 0.71
VPS4AQ9UN37 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
VPS4AQ9UN37 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
VPS4AQ9UN37 AC020907.5-201ENST00000624372 1936 ntBASIC19.49■□□□□ 0.71
VPS4AQ9UN37 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
VPS4AQ9UN37 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC19.49■□□□□ 0.71
VPS4AQ9UN37 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
VPS4AQ9UN37 PRORSD1P-201ENST00000295112 541 ntBASIC19.49■□□□□ 0.71
VPS4AQ9UN37 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC19.49■□□□□ 0.71
VPS4AQ9UN37 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
VPS4AQ9UN37 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC19.49■□□□□ 0.71
VPS4AQ9UN37 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC19.49■□□□□ 0.71
VPS4AQ9UN37 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
VPS4AQ9UN37 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
VPS4AQ9UN37 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
VPS4AQ9UN37 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC19.49■□□□□ 0.71
VPS4AQ9UN37 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC19.49■□□□□ 0.71
VPS4AQ9UN37 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
VPS4AQ9UN37 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC19.49■□□□□ 0.71
VPS4AQ9UN37 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
VPS4AQ9UN37 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC19.48■□□□□ 0.71
VPS4AQ9UN37 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
VPS4AQ9UN37 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC19.48■□□□□ 0.71
VPS4AQ9UN37 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
VPS4AQ9UN37 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC19.48■□□□□ 0.71
VPS4AQ9UN37 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
VPS4AQ9UN37 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC19.48■□□□□ 0.71
VPS4AQ9UN37 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
VPS4AQ9UN37 AC098934.4-201ENST00000564127 592 ntBASIC19.48■□□□□ 0.71
VPS4AQ9UN37 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC19.48■□□□□ 0.71
VPS4AQ9UN37 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
VPS4AQ9UN37 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
VPS4AQ9UN37 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
VPS4AQ9UN37 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
VPS4AQ9UN37 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
VPS4AQ9UN37 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC19.47■□□□□ 0.71
VPS4AQ9UN37 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
VPS4AQ9UN37 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
VPS4AQ9UN37 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
VPS4AQ9UN37 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
VPS4AQ9UN37 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
VPS4AQ9UN37 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
VPS4AQ9UN37 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC19.47■□□□□ 0.71
VPS4AQ9UN37 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC19.47■□□□□ 0.71
VPS4AQ9UN37 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
VPS4AQ9UN37 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC19.47■□□□□ 0.71
VPS4AQ9UN37 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC19.47■□□□□ 0.71
VPS4AQ9UN37 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC19.47■□□□□ 0.71
VPS4AQ9UN37 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC19.47■□□□□ 0.71
VPS4AQ9UN37 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
VPS4AQ9UN37 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC19.47■□□□□ 0.71
VPS4AQ9UN37 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
VPS4AQ9UN37 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC19.46■□□□□ 0.71
VPS4AQ9UN37 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
VPS4AQ9UN37 RPS2P52-201ENST00000469610 820 ntBASIC19.46■□□□□ 0.71
VPS4AQ9UN37 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC19.46■□□□□ 0.71
VPS4AQ9UN37 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC19.46■□□□□ 0.71
VPS4AQ9UN37 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
VPS4AQ9UN37 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
VPS4AQ9UN37 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
VPS4AQ9UN37 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC19.46■□□□□ 0.71
VPS4AQ9UN37 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC19.46■□□□□ 0.71
VPS4AQ9UN37 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
VPS4AQ9UN37 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC19.46■□□□□ 0.71
VPS4AQ9UN37 STAC-204ENST00000457375 1366 ntTSL 2 BASIC19.45■□□□□ 0.7
VPS4AQ9UN37 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
VPS4AQ9UN37 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC19.45■□□□□ 0.7
VPS4AQ9UN37 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
VPS4AQ9UN37 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
VPS4AQ9UN37 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
VPS4AQ9UN37 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC19.45■□□□□ 0.7
VPS4AQ9UN37 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
VPS4AQ9UN37 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
VPS4AQ9UN37 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
VPS4AQ9UN37 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC19.45■□□□□ 0.7
VPS4AQ9UN37 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
VPS4AQ9UN37 CNN2P6-201ENST00000439038 900 ntBASIC19.45■□□□□ 0.7
VPS4AQ9UN37 SERP1-208ENST00000491660 830 ntTSL 2 BASIC19.45■□□□□ 0.7
VPS4AQ9UN37 AC010536.3-201ENST00000620306 533 ntBASIC19.45■□□□□ 0.7
VPS4AQ9UN37 AC120498.10-201ENST00000621827 505 ntBASIC19.45■□□□□ 0.7
VPS4AQ9UN37 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC19.45■□□□□ 0.7
VPS4AQ9UN37 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
VPS4AQ9UN37 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
VPS4AQ9UN37 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC19.45■□□□□ 0.7
VPS4AQ9UN37 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC19.45■□□□□ 0.7
VPS4AQ9UN37 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
VPS4AQ9UN37 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
VPS4AQ9UN37 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
VPS4AQ9UN37 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
VPS4AQ9UN37 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
VPS4AQ9UN37 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
VPS4AQ9UN37 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC19.44■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 11.3 ms