Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC25.86■■□□□ 1.73
USP42Q9H9J4 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC25.86■■□□□ 1.73
USP42Q9H9J4 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
USP42Q9H9J4 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
USP42Q9H9J4 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC25.86■■□□□ 1.73
USP42Q9H9J4 AC026471.5-201ENST00000615068 467 ntBASIC25.86■■□□□ 1.73
USP42Q9H9J4 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
USP42Q9H9J4 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC25.86■■□□□ 1.73
USP42Q9H9J4 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
USP42Q9H9J4 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
USP42Q9H9J4 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC25.85■■□□□ 1.73
USP42Q9H9J4 AC026310.3-201ENST00000625186 2373 ntBASIC25.85■■□□□ 1.73
USP42Q9H9J4 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC25.85■■□□□ 1.73
USP42Q9H9J4 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC25.85■■□□□ 1.73
USP42Q9H9J4 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
USP42Q9H9J4 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC25.85■■□□□ 1.73
USP42Q9H9J4 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
USP42Q9H9J4 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
USP42Q9H9J4 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC25.85■■□□□ 1.73
USP42Q9H9J4 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC25.85■■□□□ 1.73
USP42Q9H9J4 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC25.85■■□□□ 1.73
USP42Q9H9J4 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC25.85■■□□□ 1.73
USP42Q9H9J4 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC25.85■■□□□ 1.73
USP42Q9H9J4 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC25.85■■□□□ 1.73
USP42Q9H9J4 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC25.85■■□□□ 1.73
USP42Q9H9J4 GRAP-204ENST00000573099 846 ntTSL 3 BASIC25.85■■□□□ 1.73
USP42Q9H9J4 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC25.84■■□□□ 1.73
USP42Q9H9J4 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC25.84■■□□□ 1.73
USP42Q9H9J4 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
USP42Q9H9J4 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC25.84■■□□□ 1.73
USP42Q9H9J4 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC25.84■■□□□ 1.73
USP42Q9H9J4 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC25.84■■□□□ 1.73
USP42Q9H9J4 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
USP42Q9H9J4 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
USP42Q9H9J4 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
USP42Q9H9J4 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC25.84■■□□□ 1.73
USP42Q9H9J4 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
USP42Q9H9J4 AL445228.2-201ENST00000605589 952 ntBASIC25.84■■□□□ 1.73
USP42Q9H9J4 CD177P1-201ENST00000606252 935 ntBASIC25.84■■□□□ 1.73
USP42Q9H9J4 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
USP42Q9H9J4 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
USP42Q9H9J4 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
USP42Q9H9J4 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC25.83■■□□□ 1.73
USP42Q9H9J4 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC25.83■■□□□ 1.73
USP42Q9H9J4 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC25.83■■□□□ 1.73
USP42Q9H9J4 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC25.83■■□□□ 1.73
USP42Q9H9J4 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC25.83■■□□□ 1.73
USP42Q9H9J4 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC25.83■■□□□ 1.73
USP42Q9H9J4 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC25.83■■□□□ 1.73
USP42Q9H9J4 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC25.83■■□□□ 1.73
USP42Q9H9J4 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC25.83■■□□□ 1.73
USP42Q9H9J4 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC25.83■■□□□ 1.73
USP42Q9H9J4 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC25.83■■□□□ 1.73
USP42Q9H9J4 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC25.83■■□□□ 1.73
USP42Q9H9J4 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC25.83■■□□□ 1.73
USP42Q9H9J4 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC25.83■■□□□ 1.73
USP42Q9H9J4 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC25.83■■□□□ 1.72
USP42Q9H9J4 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC25.83■■□□□ 1.72
USP42Q9H9J4 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC25.83■■□□□ 1.72
USP42Q9H9J4 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC25.82■■□□□ 1.72
USP42Q9H9J4 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC25.82■■□□□ 1.72
USP42Q9H9J4 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC25.82■■□□□ 1.72
USP42Q9H9J4 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
USP42Q9H9J4 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC25.82■■□□□ 1.72
USP42Q9H9J4 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
USP42Q9H9J4 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
USP42Q9H9J4 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC25.82■■□□□ 1.72
USP42Q9H9J4 SAPCD2P4-201ENST00000424595 1171 ntBASIC25.82■■□□□ 1.72
USP42Q9H9J4 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC25.82■■□□□ 1.72
USP42Q9H9J4 AP003071.4-201ENST00000562276 1284 ntBASIC25.82■■□□□ 1.72
USP42Q9H9J4 RN7SL850P-201ENST00000579959 291 ntBASIC25.82■■□□□ 1.72
USP42Q9H9J4 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
USP42Q9H9J4 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC25.82■■□□□ 1.72
USP42Q9H9J4 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC25.81■■□□□ 1.72
USP42Q9H9J4 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
USP42Q9H9J4 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC25.81■■□□□ 1.72
USP42Q9H9J4 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
USP42Q9H9J4 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
USP42Q9H9J4 TMPOP1-202ENST00000424642 1267 ntBASIC25.81■■□□□ 1.72
USP42Q9H9J4 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC25.81■■□□□ 1.72
USP42Q9H9J4 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC25.81■■□□□ 1.72
USP42Q9H9J4 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC25.8■■□□□ 1.72
USP42Q9H9J4 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
USP42Q9H9J4 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
USP42Q9H9J4 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC25.8■■□□□ 1.72
USP42Q9H9J4 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC25.8■■□□□ 1.72
USP42Q9H9J4 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC25.8■■□□□ 1.72
USP42Q9H9J4 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
USP42Q9H9J4 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC25.8■■□□□ 1.72
USP42Q9H9J4 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC25.8■■□□□ 1.72
USP42Q9H9J4 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC25.8■■□□□ 1.72
USP42Q9H9J4 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC25.8■■□□□ 1.72
USP42Q9H9J4 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC25.8■■□□□ 1.72
USP42Q9H9J4 Six3os1_6.1-201ENST00000620790 196 ntBASIC25.8■■□□□ 1.72
USP42Q9H9J4 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
USP42Q9H9J4 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
USP42Q9H9J4 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC25.79■■□□□ 1.72
USP42Q9H9J4 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
USP42Q9H9J4 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC25.79■■□□□ 1.72
USP42Q9H9J4 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC25.79■■□□□ 1.72
Retrieved 100 of 98,524 protein–RNA pairs in 63.1 ms