Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
LIME1Q9H400 BX088651.1-201ENST00000540551 451 ntBASIC17.74■□□□□ 0.43
LIME1Q9H400 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC17.74■□□□□ 0.43
LIME1Q9H400 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
LIME1Q9H400 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
LIME1Q9H400 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC17.74■□□□□ 0.43
LIME1Q9H400 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC17.74■□□□□ 0.43
LIME1Q9H400 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
LIME1Q9H400 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC17.74■□□□□ 0.43
LIME1Q9H400 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
LIME1Q9H400 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
LIME1Q9H400 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
LIME1Q9H400 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
LIME1Q9H400 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
LIME1Q9H400 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC17.73■□□□□ 0.43
LIME1Q9H400 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
LIME1Q9H400 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
LIME1Q9H400 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
LIME1Q9H400 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC17.73■□□□□ 0.43
LIME1Q9H400 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
LIME1Q9H400 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
LIME1Q9H400 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
LIME1Q9H400 KRT18P68-201ENST00000392293 1000 ntBASIC17.73■□□□□ 0.43
LIME1Q9H400 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
LIME1Q9H400 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC17.73■□□□□ 0.43
LIME1Q9H400 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
LIME1Q9H400 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
LIME1Q9H400 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC17.73■□□□□ 0.43
LIME1Q9H400 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
LIME1Q9H400 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC17.73■□□□□ 0.43
LIME1Q9H400 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC17.73■□□□□ 0.43
LIME1Q9H400 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
LIME1Q9H400 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC17.72■□□□□ 0.43
LIME1Q9H400 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC17.72■□□□□ 0.43
LIME1Q9H400 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
LIME1Q9H400 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
LIME1Q9H400 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
LIME1Q9H400 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
LIME1Q9H400 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
LIME1Q9H400 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
LIME1Q9H400 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
LIME1Q9H400 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC17.72■□□□□ 0.43
LIME1Q9H400 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
LIME1Q9H400 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC17.72■□□□□ 0.43
LIME1Q9H400 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
LIME1Q9H400 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
LIME1Q9H400 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC17.72■□□□□ 0.43
LIME1Q9H400 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
LIME1Q9H400 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
LIME1Q9H400 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
LIME1Q9H400 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC17.71■□□□□ 0.43
LIME1Q9H400 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC17.71■□□□□ 0.43
LIME1Q9H400 GCK-205ENST00000437084 1385 ntTSL 5 BASIC17.71■□□□□ 0.43
LIME1Q9H400 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
LIME1Q9H400 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
LIME1Q9H400 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
LIME1Q9H400 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
LIME1Q9H400 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
LIME1Q9H400 TSPY15P-201ENST00000457163 923 ntBASIC17.71■□□□□ 0.43
LIME1Q9H400 ABHD17AP6-201ENST00000458502 1044 ntBASIC17.71■□□□□ 0.43
LIME1Q9H400 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
LIME1Q9H400 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC17.71■□□□□ 0.43
LIME1Q9H400 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC17.71■□□□□ 0.43
LIME1Q9H400 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
LIME1Q9H400 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC17.71■□□□□ 0.43
LIME1Q9H400 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
LIME1Q9H400 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
LIME1Q9H400 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
LIME1Q9H400 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
LIME1Q9H400 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.42
LIME1Q9H400 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LIME1Q9H400 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC17.7■□□□□ 0.42
LIME1Q9H400 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC17.7■□□□□ 0.42
LIME1Q9H400 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LIME1Q9H400 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC17.7■□□□□ 0.42
LIME1Q9H400 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LIME1Q9H400 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
LIME1Q9H400 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LIME1Q9H400 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LIME1Q9H400 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
LIME1Q9H400 ISG20-202ENST00000379224 540 ntTSL 3 BASIC17.7■□□□□ 0.42
LIME1Q9H400 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
LIME1Q9H400 AC245052.3-201ENST00000450182 901 ntBASIC17.7■□□□□ 0.42
LIME1Q9H400 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC17.7■□□□□ 0.42
LIME1Q9H400 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC17.7■□□□□ 0.42
LIME1Q9H400 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC17.7■□□□□ 0.42
LIME1Q9H400 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LIME1Q9H400 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC17.7■□□□□ 0.42
LIME1Q9H400 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LIME1Q9H400 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
LIME1Q9H400 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
LIME1Q9H400 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
LIME1Q9H400 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
LIME1Q9H400 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC17.7■□□□□ 0.42
LIME1Q9H400 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LIME1Q9H400 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LIME1Q9H400 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC17.7■□□□□ 0.42
LIME1Q9H400 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC17.7■□□□□ 0.42
LIME1Q9H400 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC17.69■□□□□ 0.42
LIME1Q9H400 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 43.9 ms