Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC19.06■□□□□ 0.64
PTCHD1Q96NR3 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
PTCHD1Q96NR3 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
PTCHD1Q96NR3 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC19.06■□□□□ 0.64
PTCHD1Q96NR3 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC19.06■□□□□ 0.64
PTCHD1Q96NR3 AL121603.2-201ENST00000557373 2117 ntBASIC19.06■□□□□ 0.64
PTCHD1Q96NR3 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
PTCHD1Q96NR3 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC19.05■□□□□ 0.64
PTCHD1Q96NR3 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
PTCHD1Q96NR3 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC19.05■□□□□ 0.64
PTCHD1Q96NR3 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
PTCHD1Q96NR3 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
PTCHD1Q96NR3 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC19.05■□□□□ 0.64
PTCHD1Q96NR3 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
PTCHD1Q96NR3 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
PTCHD1Q96NR3 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
PTCHD1Q96NR3 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
PTCHD1Q96NR3 MFF-205ENST00000354503 1085 ntTSL 2 BASIC19.05■□□□□ 0.64
PTCHD1Q96NR3 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
PTCHD1Q96NR3 RNA5SP413-201ENST00000516373 109 ntBASIC19.05■□□□□ 0.64
PTCHD1Q96NR3 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC19.05■□□□□ 0.64
PTCHD1Q96NR3 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC19.05■□□□□ 0.64
PTCHD1Q96NR3 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC19.05■□□□□ 0.64
PTCHD1Q96NR3 BRWD1-AS2-201ENST00000603064 1028 ntBASIC19.05■□□□□ 0.64
PTCHD1Q96NR3 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
PTCHD1Q96NR3 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
PTCHD1Q96NR3 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
PTCHD1Q96NR3 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
PTCHD1Q96NR3 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
PTCHD1Q96NR3 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC19.05■□□□□ 0.64
PTCHD1Q96NR3 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
PTCHD1Q96NR3 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
PTCHD1Q96NR3 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
PTCHD1Q96NR3 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC19.04■□□□□ 0.64
PTCHD1Q96NR3 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
PTCHD1Q96NR3 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
PTCHD1Q96NR3 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
PTCHD1Q96NR3 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
PTCHD1Q96NR3 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
PTCHD1Q96NR3 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
PTCHD1Q96NR3 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
PTCHD1Q96NR3 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC19.04■□□□□ 0.64
PTCHD1Q96NR3 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC19.04■□□□□ 0.64
PTCHD1Q96NR3 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC19.04■□□□□ 0.64
PTCHD1Q96NR3 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC19.04■□□□□ 0.64
PTCHD1Q96NR3 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC19.04■□□□□ 0.64
PTCHD1Q96NR3 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC19.04■□□□□ 0.64
PTCHD1Q96NR3 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
PTCHD1Q96NR3 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
PTCHD1Q96NR3 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC19.04■□□□□ 0.64
PTCHD1Q96NR3 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
PTCHD1Q96NR3 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC19.04■□□□□ 0.64
PTCHD1Q96NR3 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC19.03■□□□□ 0.64
PTCHD1Q96NR3 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC19.03■□□□□ 0.64
PTCHD1Q96NR3 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
PTCHD1Q96NR3 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
PTCHD1Q96NR3 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
PTCHD1Q96NR3 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
PTCHD1Q96NR3 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC19.03■□□□□ 0.64
PTCHD1Q96NR3 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC19.03■□□□□ 0.64
PTCHD1Q96NR3 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC19.03■□□□□ 0.64
PTCHD1Q96NR3 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC19.03■□□□□ 0.64
PTCHD1Q96NR3 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC19.03■□□□□ 0.64
PTCHD1Q96NR3 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
PTCHD1Q96NR3 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
PTCHD1Q96NR3 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
PTCHD1Q96NR3 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
PTCHD1Q96NR3 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
PTCHD1Q96NR3 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC19.03■□□□□ 0.64
PTCHD1Q96NR3 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC19.02■□□□□ 0.64
PTCHD1Q96NR3 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
PTCHD1Q96NR3 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC19.02■□□□□ 0.64
PTCHD1Q96NR3 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC19.02■□□□□ 0.64
PTCHD1Q96NR3 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
PTCHD1Q96NR3 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.64
PTCHD1Q96NR3 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC19.02■□□□□ 0.64
PTCHD1Q96NR3 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC19.02■□□□□ 0.64
PTCHD1Q96NR3 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
PTCHD1Q96NR3 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
PTCHD1Q96NR3 TBCB-214ENST00000629269 413 ntTSL 5 BASIC19.02■□□□□ 0.64
PTCHD1Q96NR3 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
PTCHD1Q96NR3 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC19.02■□□□□ 0.64
PTCHD1Q96NR3 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
PTCHD1Q96NR3 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC19.02■□□□□ 0.63
PTCHD1Q96NR3 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.63
PTCHD1Q96NR3 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
PTCHD1Q96NR3 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
PTCHD1Q96NR3 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.63
PTCHD1Q96NR3 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC19.02■□□□□ 0.63
PTCHD1Q96NR3 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC19.01■□□□□ 0.63
PTCHD1Q96NR3 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
PTCHD1Q96NR3 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
PTCHD1Q96NR3 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
PTCHD1Q96NR3 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
PTCHD1Q96NR3 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
PTCHD1Q96NR3 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
PTCHD1Q96NR3 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC19.01■□□□□ 0.63
PTCHD1Q96NR3 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC19.01■□□□□ 0.63
PTCHD1Q96NR3 INO80E-214ENST00000620599 515 ntTSL 2 BASIC19.01■□□□□ 0.63
PTCHD1Q96NR3 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 35.4 ms