Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC19.29■□□□□ 0.68
VMP1Q96GC9 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
VMP1Q96GC9 METTL15-202ENST00000403099 795 ntTSL 5 BASIC19.29■□□□□ 0.68
VMP1Q96GC9 DYM-203ENST00000442713 2147 ntTSL 2 BASIC19.29■□□□□ 0.68
VMP1Q96GC9 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
VMP1Q96GC9 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC19.29■□□□□ 0.68
VMP1Q96GC9 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
VMP1Q96GC9 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
VMP1Q96GC9 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
VMP1Q96GC9 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC19.29■□□□□ 0.68
VMP1Q96GC9 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
VMP1Q96GC9 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
VMP1Q96GC9 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC19.29■□□□□ 0.68
VMP1Q96GC9 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
VMP1Q96GC9 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
VMP1Q96GC9 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC19.28■□□□□ 0.68
VMP1Q96GC9 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
VMP1Q96GC9 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
VMP1Q96GC9 PARN-205ENST00000539279 1557 ntTSL 2 BASIC19.28■□□□□ 0.68
VMP1Q96GC9 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC19.28■□□□□ 0.68
VMP1Q96GC9 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
VMP1Q96GC9 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC19.28■□□□□ 0.68
VMP1Q96GC9 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
VMP1Q96GC9 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
VMP1Q96GC9 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
VMP1Q96GC9 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC19.28■□□□□ 0.68
VMP1Q96GC9 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
VMP1Q96GC9 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC19.28■□□□□ 0.68
VMP1Q96GC9 AC105036.2-201ENST00000569468 176 ntBASIC19.28■□□□□ 0.68
VMP1Q96GC9 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
VMP1Q96GC9 AC104771.1-201ENST00000603335 964 ntBASIC19.28■□□□□ 0.68
VMP1Q96GC9 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC19.28■□□□□ 0.68
VMP1Q96GC9 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC19.28■□□□□ 0.68
VMP1Q96GC9 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC19.28■□□□□ 0.68
VMP1Q96GC9 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
VMP1Q96GC9 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC19.28■□□□□ 0.68
VMP1Q96GC9 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC19.28■□□□□ 0.68
VMP1Q96GC9 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
VMP1Q96GC9 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
VMP1Q96GC9 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
VMP1Q96GC9 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
VMP1Q96GC9 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
VMP1Q96GC9 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
VMP1Q96GC9 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
VMP1Q96GC9 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
VMP1Q96GC9 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC19.27■□□□□ 0.68
VMP1Q96GC9 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
VMP1Q96GC9 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
VMP1Q96GC9 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
VMP1Q96GC9 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
VMP1Q96GC9 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
VMP1Q96GC9 PTPA-214ENST00000423100 988 ntTSL 2 BASIC19.27■□□□□ 0.68
VMP1Q96GC9 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC19.27■□□□□ 0.68
VMP1Q96GC9 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC19.27■□□□□ 0.68
VMP1Q96GC9 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC19.27■□□□□ 0.68
VMP1Q96GC9 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC19.27■□□□□ 0.68
VMP1Q96GC9 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
VMP1Q96GC9 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC19.27■□□□□ 0.68
VMP1Q96GC9 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC19.27■□□□□ 0.67
VMP1Q96GC9 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC19.27■□□□□ 0.67
VMP1Q96GC9 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
VMP1Q96GC9 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
VMP1Q96GC9 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.67
VMP1Q96GC9 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.67
VMP1Q96GC9 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC19.26■□□□□ 0.67
VMP1Q96GC9 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
VMP1Q96GC9 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
VMP1Q96GC9 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
VMP1Q96GC9 SLC29A4P1-201ENST00000398760 971 ntBASIC19.26■□□□□ 0.67
VMP1Q96GC9 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC19.26■□□□□ 0.67
VMP1Q96GC9 RARRES2P4-201ENST00000514074 484 ntBASIC19.26■□□□□ 0.67
VMP1Q96GC9 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
VMP1Q96GC9 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC19.26■□□□□ 0.67
VMP1Q96GC9 FAM21FP-204ENST00000608637 956 ntBASIC19.26■□□□□ 0.67
VMP1Q96GC9 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
VMP1Q96GC9 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC19.26■□□□□ 0.67
VMP1Q96GC9 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
VMP1Q96GC9 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
VMP1Q96GC9 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
VMP1Q96GC9 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
VMP1Q96GC9 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
VMP1Q96GC9 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
VMP1Q96GC9 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
VMP1Q96GC9 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC19.25■□□□□ 0.67
VMP1Q96GC9 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC19.25■□□□□ 0.67
VMP1Q96GC9 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC19.25■□□□□ 0.67
VMP1Q96GC9 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC19.25■□□□□ 0.67
VMP1Q96GC9 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC19.25■□□□□ 0.67
VMP1Q96GC9 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC19.25■□□□□ 0.67
VMP1Q96GC9 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
VMP1Q96GC9 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
VMP1Q96GC9 AL512625.2-201ENST00000417533 625 ntBASIC19.25■□□□□ 0.67
VMP1Q96GC9 AC007322.3-201ENST00000426526 701 ntBASIC19.25■□□□□ 0.67
VMP1Q96GC9 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
VMP1Q96GC9 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
VMP1Q96GC9 TSPY6P-201ENST00000448518 926 ntBASIC19.25■□□□□ 0.67
VMP1Q96GC9 CASP6-205ENST00000505486 538 ntTSL 4 BASIC19.25■□□□□ 0.67
VMP1Q96GC9 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC19.25■□□□□ 0.67
VMP1Q96GC9 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC19.25■□□□□ 0.67
VMP1Q96GC9 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC19.25■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 33.9 ms