Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CHFRQ96EP1 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC20.67■□□□□ 0.9
CHFRQ96EP1 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CHFRQ96EP1 AC087499.1-201ENST00000418141 1075 ntBASIC20.67■□□□□ 0.9
CHFRQ96EP1 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC20.67■□□□□ 0.9
CHFRQ96EP1 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC20.67■□□□□ 0.9
CHFRQ96EP1 SNX21-213ENST00000614929 587 ntTSL 5 BASIC20.67■□□□□ 0.9
CHFRQ96EP1 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC20.67■□□□□ 0.9
CHFRQ96EP1 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CHFRQ96EP1 KRT8P36-201ENST00000489121 1440 ntBASIC20.67■□□□□ 0.9
CHFRQ96EP1 AL135905.2-201ENST00000584934 1404 ntBASIC20.67■□□□□ 0.9
CHFRQ96EP1 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CHFRQ96EP1 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
CHFRQ96EP1 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
CHFRQ96EP1 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
CHFRQ96EP1 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CHFRQ96EP1 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC20.66■□□□□ 0.9
CHFRQ96EP1 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CHFRQ96EP1 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CHFRQ96EP1 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CHFRQ96EP1 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CHFRQ96EP1 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC20.66■□□□□ 0.9
CHFRQ96EP1 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC20.66■□□□□ 0.9
CHFRQ96EP1 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC20.66■□□□□ 0.9
CHFRQ96EP1 MIR4785-201ENST00000585005 73 ntBASIC20.66■□□□□ 0.9
CHFRQ96EP1 AP001412.1-201ENST00000608405 714 ntBASIC20.66■□□□□ 0.9
CHFRQ96EP1 AC012306.2-201ENST00000609350 630 ntBASIC20.66■□□□□ 0.9
CHFRQ96EP1 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
CHFRQ96EP1 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC20.66■□□□□ 0.9
CHFRQ96EP1 CABP2-204ENST00000636477 941 ntTSL 5 BASIC20.66■□□□□ 0.9
CHFRQ96EP1 STAC-204ENST00000457375 1366 ntTSL 2 BASIC20.66■□□□□ 0.9
CHFRQ96EP1 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC20.66■□□□□ 0.9
CHFRQ96EP1 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC20.66■□□□□ 0.9
CHFRQ96EP1 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CHFRQ96EP1 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CHFRQ96EP1 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
CHFRQ96EP1 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC20.65■□□□□ 0.9
CHFRQ96EP1 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CHFRQ96EP1 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CHFRQ96EP1 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CHFRQ96EP1 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
CHFRQ96EP1 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC20.65■□□□□ 0.9
CHFRQ96EP1 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC20.65■□□□□ 0.9
CHFRQ96EP1 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CHFRQ96EP1 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC20.65■□□□□ 0.9
CHFRQ96EP1 MIR2861-201ENST00000636310 90 ntBASIC20.65■□□□□ 0.9
CHFRQ96EP1 Z98882.1-201ENST00000622160 2253 ntBASIC20.65■□□□□ 0.9
CHFRQ96EP1 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CHFRQ96EP1 AL117328.2-201ENST00000624617 1940 ntBASIC20.65■□□□□ 0.9
CHFRQ96EP1 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
CHFRQ96EP1 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
CHFRQ96EP1 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.9
CHFRQ96EP1 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
CHFRQ96EP1 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CHFRQ96EP1 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
CHFRQ96EP1 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
CHFRQ96EP1 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CHFRQ96EP1 AC023632.3-201ENST00000521633 145 ntBASIC20.64■□□□□ 0.89
CHFRQ96EP1 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CHFRQ96EP1 GRAP-204ENST00000573099 846 ntTSL 3 BASIC20.64■□□□□ 0.89
CHFRQ96EP1 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CHFRQ96EP1 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
CHFRQ96EP1 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC20.64■□□□□ 0.89
CHFRQ96EP1 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC20.64■□□□□ 0.89
CHFRQ96EP1 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
CHFRQ96EP1 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
CHFRQ96EP1 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CHFRQ96EP1 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
CHFRQ96EP1 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC20.63■□□□□ 0.89
CHFRQ96EP1 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
CHFRQ96EP1 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC20.63■□□□□ 0.89
CHFRQ96EP1 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
CHFRQ96EP1 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
CHFRQ96EP1 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CHFRQ96EP1 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CHFRQ96EP1 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC20.63■□□□□ 0.89
CHFRQ96EP1 MIR1224-201ENST00000408193 85 ntBASIC20.63■□□□□ 0.89
CHFRQ96EP1 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC20.63■□□□□ 0.89
CHFRQ96EP1 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC20.63■□□□□ 0.89
CHFRQ96EP1 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC20.63■□□□□ 0.89
CHFRQ96EP1 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CHFRQ96EP1 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC20.63■□□□□ 0.89
CHFRQ96EP1 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC20.63■□□□□ 0.89
CHFRQ96EP1 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC20.63■□□□□ 0.89
CHFRQ96EP1 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC20.63■□□□□ 0.89
CHFRQ96EP1 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC20.63■□□□□ 0.89
CHFRQ96EP1 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
CHFRQ96EP1 AL121829.2-201ENST00000620908 328 ntBASIC20.63■□□□□ 0.89
CHFRQ96EP1 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC20.63■□□□□ 0.89
CHFRQ96EP1 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC20.63■□□□□ 0.89
CHFRQ96EP1 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC20.63■□□□□ 0.89
CHFRQ96EP1 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
CHFRQ96EP1 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CHFRQ96EP1 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
CHFRQ96EP1 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC20.62■□□□□ 0.89
CHFRQ96EP1 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
CHFRQ96EP1 FBXW4P1-201ENST00000426721 2239 ntBASIC20.62■□□□□ 0.89
CHFRQ96EP1 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
CHFRQ96EP1 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CHFRQ96EP1 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC20.62■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 51.7 ms