Protein–RNA interactions for Protein: Q92541

RTF1, RNA polymerase-associated protein RTF1 homolog, humanhuman

Known RBP Predictions only

Length 710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1Q92541 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.82
RTF1Q92541 AC006128.1-201ENST00000624704 1661 ntBASIC26.44■■□□□ 1.82
RTF1Q92541 AL121603.2-201ENST00000557373 2117 ntBASIC26.44■■□□□ 1.82
RTF1Q92541 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC26.44■■□□□ 1.82
RTF1Q92541 BAALC-201ENST00000297574 801 ntTSL 3 BASIC26.44■■□□□ 1.82
RTF1Q92541 PEX7-202ENST00000367756 680 ntTSL 3 BASIC26.44■■□□□ 1.82
RTF1Q92541 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC26.44■■□□□ 1.82
RTF1Q92541 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC26.44■■□□□ 1.82
RTF1Q92541 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC26.44■■□□□ 1.82
RTF1Q92541 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC26.44■■□□□ 1.82
RTF1Q92541 RPPH1-201ENST00000516869 333 ntBASIC26.44■■□□□ 1.82
RTF1Q92541 AC023632.3-201ENST00000521633 145 ntBASIC26.44■■□□□ 1.82
RTF1Q92541 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
RTF1Q92541 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
RTF1Q92541 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC26.44■■□□□ 1.82
RTF1Q92541 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
RTF1Q92541 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC26.43■■□□□ 1.82
RTF1Q92541 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC26.43■■□□□ 1.82
RTF1Q92541 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
RTF1Q92541 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC26.43■■□□□ 1.82
RTF1Q92541 FP700111.2-201ENST00000619190 1892 ntBASIC26.43■■□□□ 1.82
RTF1Q92541 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC26.43■■□□□ 1.82
RTF1Q92541 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC26.43■■□□□ 1.82
RTF1Q92541 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
RTF1Q92541 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC26.43■■□□□ 1.82
RTF1Q92541 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC26.43■■□□□ 1.82
RTF1Q92541 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC26.43■■□□□ 1.82
RTF1Q92541 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC26.43■■□□□ 1.82
RTF1Q92541 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC26.42■■□□□ 1.82
RTF1Q92541 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC26.42■■□□□ 1.82
RTF1Q92541 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC26.42■■□□□ 1.82
RTF1Q92541 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC26.42■■□□□ 1.82
RTF1Q92541 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC26.42■■□□□ 1.82
RTF1Q92541 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
RTF1Q92541 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC26.42■■□□□ 1.82
RTF1Q92541 THEM4-205ENST00000489410 643 ntTSL 2 BASIC26.42■■□□□ 1.82
RTF1Q92541 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC26.42■■□□□ 1.82
RTF1Q92541 RNF121-214ENST00000533380 870 ntTSL 3 BASIC26.42■■□□□ 1.82
RTF1Q92541 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC26.42■■□□□ 1.82
RTF1Q92541 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
RTF1Q92541 FAM197Y4-202ENST00000622692 608 ntBASIC26.42■■□□□ 1.82
RTF1Q92541 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
RTF1Q92541 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
RTF1Q92541 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
RTF1Q92541 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
RTF1Q92541 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC26.42■■□□□ 1.82
RTF1Q92541 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC26.42■■□□□ 1.82
RTF1Q92541 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC26.42■■□□□ 1.82
RTF1Q92541 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
RTF1Q92541 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC26.41■■□□□ 1.82
RTF1Q92541 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC26.41■■□□□ 1.82
RTF1Q92541 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC26.41■■□□□ 1.82
RTF1Q92541 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC26.41■■□□□ 1.82
RTF1Q92541 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC26.41■■□□□ 1.82
RTF1Q92541 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC26.41■■□□□ 1.82
RTF1Q92541 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC26.41■■□□□ 1.82
RTF1Q92541 AC005229.4-201ENST00000610085 2198 ntBASIC26.41■■□□□ 1.82
RTF1Q92541 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC26.41■■□□□ 1.82
RTF1Q92541 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
RTF1Q92541 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
RTF1Q92541 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC26.4■■□□□ 1.82
RTF1Q92541 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC26.4■■□□□ 1.82
RTF1Q92541 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC26.4■■□□□ 1.82
RTF1Q92541 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC26.4■■□□□ 1.82
RTF1Q92541 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC26.4■■□□□ 1.82
RTF1Q92541 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC26.4■■□□□ 1.82
RTF1Q92541 UBE2SP1-201ENST00000450587 669 ntBASIC26.4■■□□□ 1.82
RTF1Q92541 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC26.4■■□□□ 1.82
RTF1Q92541 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC26.4■■□□□ 1.82
RTF1Q92541 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC26.4■■□□□ 1.82
RTF1Q92541 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC26.4■■□□□ 1.82
RTF1Q92541 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC26.4■■□□□ 1.82
RTF1Q92541 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC26.4■■□□□ 1.82
RTF1Q92541 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC26.4■■□□□ 1.82
RTF1Q92541 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC26.4■■□□□ 1.82
RTF1Q92541 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC26.4■■□□□ 1.82
RTF1Q92541 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
RTF1Q92541 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
RTF1Q92541 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC26.39■■□□□ 1.82
RTF1Q92541 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC26.39■■□□□ 1.82
RTF1Q92541 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC26.39■■□□□ 1.82
RTF1Q92541 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC26.39■■□□□ 1.82
RTF1Q92541 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC26.39■■□□□ 1.82
RTF1Q92541 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC26.39■■□□□ 1.81
RTF1Q92541 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC26.39■■□□□ 1.81
RTF1Q92541 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC26.39■■□□□ 1.81
RTF1Q92541 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC26.39■■□□□ 1.81
RTF1Q92541 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
RTF1Q92541 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC26.38■■□□□ 1.81
RTF1Q92541 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC26.38■■□□□ 1.81
RTF1Q92541 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC26.38■■□□□ 1.81
RTF1Q92541 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC26.38■■□□□ 1.81
RTF1Q92541 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
RTF1Q92541 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
RTF1Q92541 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC26.38■■□□□ 1.81
RTF1Q92541 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC26.38■■□□□ 1.81
RTF1Q92541 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC26.38■■□□□ 1.81
RTF1Q92541 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC26.38■■□□□ 1.81
RTF1Q92541 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
RTF1Q92541 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
Retrieved 100 of 98,524 protein–RNA pairs in 45.1 ms