Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 AL135905.2-201ENST00000584934 1404 ntBASIC26.82■■□□□ 1.88
USHBP1Q8N6Y0 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC26.81■■□□□ 1.88
USHBP1Q8N6Y0 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC26.81■■□□□ 1.88
USHBP1Q8N6Y0 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC26.81■■□□□ 1.88
USHBP1Q8N6Y0 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC26.81■■□□□ 1.88
USHBP1Q8N6Y0 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC26.81■■□□□ 1.88
USHBP1Q8N6Y0 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC26.81■■□□□ 1.88
USHBP1Q8N6Y0 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC26.81■■□□□ 1.88
USHBP1Q8N6Y0 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC26.81■■□□□ 1.88
USHBP1Q8N6Y0 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC26.81■■□□□ 1.88
USHBP1Q8N6Y0 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC26.81■■□□□ 1.88
USHBP1Q8N6Y0 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC26.81■■□□□ 1.88
USHBP1Q8N6Y0 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC26.81■■□□□ 1.88
USHBP1Q8N6Y0 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
USHBP1Q8N6Y0 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
USHBP1Q8N6Y0 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC26.81■■□□□ 1.88
USHBP1Q8N6Y0 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.88
USHBP1Q8N6Y0 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.88
USHBP1Q8N6Y0 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.88
USHBP1Q8N6Y0 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC26.8■■□□□ 1.88
USHBP1Q8N6Y0 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.88
USHBP1Q8N6Y0 AP001412.1-201ENST00000608405 714 ntBASIC26.8■■□□□ 1.88
USHBP1Q8N6Y0 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.88
USHBP1Q8N6Y0 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC26.8■■□□□ 1.88
USHBP1Q8N6Y0 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC26.8■■□□□ 1.88
USHBP1Q8N6Y0 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC26.8■■□□□ 1.88
USHBP1Q8N6Y0 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC26.8■■□□□ 1.88
USHBP1Q8N6Y0 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC26.8■■□□□ 1.88
USHBP1Q8N6Y0 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC26.8■■□□□ 1.88
USHBP1Q8N6Y0 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC26.79■■□□□ 1.88
USHBP1Q8N6Y0 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC26.79■■□□□ 1.88
USHBP1Q8N6Y0 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
USHBP1Q8N6Y0 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC26.79■■□□□ 1.88
USHBP1Q8N6Y0 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC26.79■■□□□ 1.88
USHBP1Q8N6Y0 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC26.79■■□□□ 1.88
USHBP1Q8N6Y0 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC26.79■■□□□ 1.88
USHBP1Q8N6Y0 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC26.79■■□□□ 1.88
USHBP1Q8N6Y0 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC26.79■■□□□ 1.88
USHBP1Q8N6Y0 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC26.79■■□□□ 1.88
USHBP1Q8N6Y0 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC26.79■■□□□ 1.88
USHBP1Q8N6Y0 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC26.79■■□□□ 1.88
USHBP1Q8N6Y0 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC26.79■■□□□ 1.88
USHBP1Q8N6Y0 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
USHBP1Q8N6Y0 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC26.79■■□□□ 1.88
USHBP1Q8N6Y0 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC26.79■■□□□ 1.88
USHBP1Q8N6Y0 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC26.79■■□□□ 1.88
USHBP1Q8N6Y0 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC26.79■■□□□ 1.88
USHBP1Q8N6Y0 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC26.79■■□□□ 1.88
USHBP1Q8N6Y0 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC26.79■■□□□ 1.88
USHBP1Q8N6Y0 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
USHBP1Q8N6Y0 SAPCD2P4-201ENST00000424595 1171 ntBASIC26.78■■□□□ 1.88
USHBP1Q8N6Y0 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC26.78■■□□□ 1.88
USHBP1Q8N6Y0 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC26.78■■□□□ 1.88
USHBP1Q8N6Y0 F2R-202ENST00000505600 442 ntTSL 2 BASIC26.78■■□□□ 1.88
USHBP1Q8N6Y0 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC26.78■■□□□ 1.88
USHBP1Q8N6Y0 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC26.78■■□□□ 1.88
USHBP1Q8N6Y0 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC26.78■■□□□ 1.88
USHBP1Q8N6Y0 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC26.78■■□□□ 1.88
USHBP1Q8N6Y0 GRAP-204ENST00000573099 846 ntTSL 3 BASIC26.78■■□□□ 1.88
USHBP1Q8N6Y0 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
USHBP1Q8N6Y0 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC26.78■■□□□ 1.88
USHBP1Q8N6Y0 SNX21-213ENST00000614929 587 ntTSL 5 BASIC26.78■■□□□ 1.88
USHBP1Q8N6Y0 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC26.78■■□□□ 1.88
USHBP1Q8N6Y0 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC26.78■■□□□ 1.88
USHBP1Q8N6Y0 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
USHBP1Q8N6Y0 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
USHBP1Q8N6Y0 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC26.78■■□□□ 1.88
USHBP1Q8N6Y0 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC26.78■■□□□ 1.88
USHBP1Q8N6Y0 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC26.77■■□□□ 1.88
USHBP1Q8N6Y0 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC26.77■■□□□ 1.88
USHBP1Q8N6Y0 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC26.77■■□□□ 1.88
USHBP1Q8N6Y0 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC26.77■■□□□ 1.88
USHBP1Q8N6Y0 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC26.77■■□□□ 1.88
USHBP1Q8N6Y0 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
USHBP1Q8N6Y0 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC26.77■■□□□ 1.88
USHBP1Q8N6Y0 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
USHBP1Q8N6Y0 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC26.77■■□□□ 1.88
USHBP1Q8N6Y0 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC26.77■■□□□ 1.88
USHBP1Q8N6Y0 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC26.77■■□□□ 1.88
USHBP1Q8N6Y0 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC26.77■■□□□ 1.88
USHBP1Q8N6Y0 AC010331.1-201ENST00000611423 582 ntBASIC26.77■■□□□ 1.88
USHBP1Q8N6Y0 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC26.77■■□□□ 1.88
USHBP1Q8N6Y0 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC26.77■■□□□ 1.88
USHBP1Q8N6Y0 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
USHBP1Q8N6Y0 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC26.77■■□□□ 1.88
USHBP1Q8N6Y0 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.88
USHBP1Q8N6Y0 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC26.76■■□□□ 1.87
USHBP1Q8N6Y0 HTR7P1-201ENST00000538670 1336 ntBASIC26.76■■□□□ 1.87
USHBP1Q8N6Y0 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC26.76■■□□□ 1.87
USHBP1Q8N6Y0 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC26.76■■□□□ 1.87
USHBP1Q8N6Y0 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC26.76■■□□□ 1.87
USHBP1Q8N6Y0 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC26.76■■□□□ 1.87
USHBP1Q8N6Y0 AC023632.3-201ENST00000521633 145 ntBASIC26.76■■□□□ 1.87
USHBP1Q8N6Y0 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC26.76■■□□□ 1.87
USHBP1Q8N6Y0 AL121829.2-201ENST00000620908 328 ntBASIC26.76■■□□□ 1.87
USHBP1Q8N6Y0 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC26.76■■□□□ 1.87
USHBP1Q8N6Y0 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.87
USHBP1Q8N6Y0 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC26.76■■□□□ 1.87
USHBP1Q8N6Y0 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC26.76■■□□□ 1.87
USHBP1Q8N6Y0 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC26.76■■□□□ 1.87
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms