Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC19.8■□□□□ 0.76
VRK3Q8IV63 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
VRK3Q8IV63 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC19.8■□□□□ 0.76
VRK3Q8IV63 PPP1R14BP2-201ENST00000426284 444 ntBASIC19.8■□□□□ 0.76
VRK3Q8IV63 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC19.8■□□□□ 0.76
VRK3Q8IV63 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC19.8■□□□□ 0.76
VRK3Q8IV63 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
VRK3Q8IV63 C2orf69P4-201ENST00000565394 541 ntBASIC19.8■□□□□ 0.76
VRK3Q8IV63 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC19.8■□□□□ 0.76
VRK3Q8IV63 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
VRK3Q8IV63 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
VRK3Q8IV63 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
VRK3Q8IV63 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
VRK3Q8IV63 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
VRK3Q8IV63 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC19.8■□□□□ 0.76
VRK3Q8IV63 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
VRK3Q8IV63 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
VRK3Q8IV63 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC19.79■□□□□ 0.76
VRK3Q8IV63 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
VRK3Q8IV63 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC19.79■□□□□ 0.76
VRK3Q8IV63 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC19.79■□□□□ 0.76
VRK3Q8IV63 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC19.79■□□□□ 0.76
VRK3Q8IV63 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
VRK3Q8IV63 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
VRK3Q8IV63 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
VRK3Q8IV63 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
VRK3Q8IV63 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
VRK3Q8IV63 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
VRK3Q8IV63 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
VRK3Q8IV63 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
VRK3Q8IV63 AL355802.2-201ENST00000402069 882 ntBASIC19.79■□□□□ 0.76
VRK3Q8IV63 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC19.79■□□□□ 0.76
VRK3Q8IV63 AC142086.2-201ENST00000569753 217 ntBASIC19.79■□□□□ 0.76
VRK3Q8IV63 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
VRK3Q8IV63 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
VRK3Q8IV63 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
VRK3Q8IV63 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC19.79■□□□□ 0.76
VRK3Q8IV63 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
VRK3Q8IV63 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC19.78■□□□□ 0.76
VRK3Q8IV63 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
VRK3Q8IV63 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
VRK3Q8IV63 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
VRK3Q8IV63 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
VRK3Q8IV63 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
VRK3Q8IV63 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC19.78■□□□□ 0.76
VRK3Q8IV63 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
VRK3Q8IV63 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
VRK3Q8IV63 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC19.78■□□□□ 0.76
VRK3Q8IV63 AC091874.3-201ENST00000512672 1195 ntBASIC19.78■□□□□ 0.76
VRK3Q8IV63 BET1L-207ENST00000529614 560 ntTSL 5 BASIC19.78■□□□□ 0.76
VRK3Q8IV63 MIR4758-201ENST00000577688 71 ntBASIC19.78■□□□□ 0.76
VRK3Q8IV63 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC19.78■□□□□ 0.76
VRK3Q8IV63 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
VRK3Q8IV63 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
VRK3Q8IV63 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
VRK3Q8IV63 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
VRK3Q8IV63 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC19.78■□□□□ 0.76
VRK3Q8IV63 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC19.78■□□□□ 0.76
VRK3Q8IV63 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC19.78■□□□□ 0.76
VRK3Q8IV63 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC19.78■□□□□ 0.76
VRK3Q8IV63 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
VRK3Q8IV63 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.76
VRK3Q8IV63 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
VRK3Q8IV63 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
VRK3Q8IV63 PTBP1P-201ENST00000554374 1601 ntBASIC19.77■□□□□ 0.76
VRK3Q8IV63 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
VRK3Q8IV63 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC19.77■□□□□ 0.76
VRK3Q8IV63 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC19.77■□□□□ 0.76
VRK3Q8IV63 SERPINH1P1-201ENST00000419794 1249 ntBASIC19.77■□□□□ 0.76
VRK3Q8IV63 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC19.77■□□□□ 0.76
VRK3Q8IV63 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
VRK3Q8IV63 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC19.77■□□□□ 0.76
VRK3Q8IV63 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
VRK3Q8IV63 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
VRK3Q8IV63 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
VRK3Q8IV63 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC19.77■□□□□ 0.75
VRK3Q8IV63 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC19.77■□□□□ 0.75
VRK3Q8IV63 AC073130.3-201ENST00000624389 2278 ntBASIC19.77■□□□□ 0.75
VRK3Q8IV63 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC19.77■□□□□ 0.75
VRK3Q8IV63 NXN-202ENST00000537628 1340 ntTSL 3 BASIC19.76■□□□□ 0.75
VRK3Q8IV63 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
VRK3Q8IV63 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC19.76■□□□□ 0.75
VRK3Q8IV63 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
VRK3Q8IV63 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
VRK3Q8IV63 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
VRK3Q8IV63 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
VRK3Q8IV63 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
VRK3Q8IV63 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
VRK3Q8IV63 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
VRK3Q8IV63 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
VRK3Q8IV63 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC19.76■□□□□ 0.75
VRK3Q8IV63 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
VRK3Q8IV63 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
VRK3Q8IV63 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
VRK3Q8IV63 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC19.75■□□□□ 0.75
VRK3Q8IV63 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
VRK3Q8IV63 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
VRK3Q8IV63 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
VRK3Q8IV63 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
VRK3Q8IV63 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC19.75■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 43.6 ms