Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
PTCHD3Q3KNS1 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC19.76■□□□□ 0.75
PTCHD3Q3KNS1 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
PTCHD3Q3KNS1 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
PTCHD3Q3KNS1 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC19.76■□□□□ 0.75
PTCHD3Q3KNS1 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC19.76■□□□□ 0.75
PTCHD3Q3KNS1 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
PTCHD3Q3KNS1 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
PTCHD3Q3KNS1 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
PTCHD3Q3KNS1 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC19.75■□□□□ 0.75
PTCHD3Q3KNS1 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
PTCHD3Q3KNS1 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC19.75■□□□□ 0.75
PTCHD3Q3KNS1 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
PTCHD3Q3KNS1 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
PTCHD3Q3KNS1 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
PTCHD3Q3KNS1 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC19.75■□□□□ 0.75
PTCHD3Q3KNS1 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
PTCHD3Q3KNS1 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
PTCHD3Q3KNS1 ABHD17AP1-201ENST00000358206 933 ntBASIC19.75■□□□□ 0.75
PTCHD3Q3KNS1 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
PTCHD3Q3KNS1 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
PTCHD3Q3KNS1 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
PTCHD3Q3KNS1 KRT18P6-201ENST00000555540 1265 ntBASIC19.75■□□□□ 0.75
PTCHD3Q3KNS1 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC19.75■□□□□ 0.75
PTCHD3Q3KNS1 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC19.75■□□□□ 0.75
PTCHD3Q3KNS1 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
PTCHD3Q3KNS1 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
PTCHD3Q3KNS1 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
PTCHD3Q3KNS1 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
PTCHD3Q3KNS1 AC087633.2-202ENST00000565166 1439 ntBASIC19.75■□□□□ 0.75
PTCHD3Q3KNS1 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC19.75■□□□□ 0.75
PTCHD3Q3KNS1 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
PTCHD3Q3KNS1 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
PTCHD3Q3KNS1 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
PTCHD3Q3KNS1 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
PTCHD3Q3KNS1 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC19.74■□□□□ 0.75
PTCHD3Q3KNS1 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
PTCHD3Q3KNS1 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
PTCHD3Q3KNS1 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC19.74■□□□□ 0.75
PTCHD3Q3KNS1 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC19.74■□□□□ 0.75
PTCHD3Q3KNS1 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
PTCHD3Q3KNS1 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC19.74■□□□□ 0.75
PTCHD3Q3KNS1 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC19.74■□□□□ 0.75
PTCHD3Q3KNS1 MIR4758-201ENST00000577688 71 ntBASIC19.74■□□□□ 0.75
PTCHD3Q3KNS1 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC19.74■□□□□ 0.75
PTCHD3Q3KNS1 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
PTCHD3Q3KNS1 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC19.74■□□□□ 0.75
PTCHD3Q3KNS1 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC19.74■□□□□ 0.75
PTCHD3Q3KNS1 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
PTCHD3Q3KNS1 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
PTCHD3Q3KNS1 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
PTCHD3Q3KNS1 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC19.74■□□□□ 0.75
PTCHD3Q3KNS1 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC19.74■□□□□ 0.75
PTCHD3Q3KNS1 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
PTCHD3Q3KNS1 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC19.74■□□□□ 0.75
PTCHD3Q3KNS1 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
PTCHD3Q3KNS1 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
PTCHD3Q3KNS1 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
PTCHD3Q3KNS1 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC19.73■□□□□ 0.75
PTCHD3Q3KNS1 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC19.73■□□□□ 0.75
PTCHD3Q3KNS1 AL162377.1-201ENST00000618844 1793 ntBASIC19.73■□□□□ 0.75
PTCHD3Q3KNS1 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
PTCHD3Q3KNS1 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
PTCHD3Q3KNS1 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
PTCHD3Q3KNS1 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
PTCHD3Q3KNS1 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
PTCHD3Q3KNS1 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
PTCHD3Q3KNS1 AL512625.2-201ENST00000417533 625 ntBASIC19.73■□□□□ 0.75
PTCHD3Q3KNS1 BX276092.2-201ENST00000417668 665 ntBASIC19.73■□□□□ 0.75
PTCHD3Q3KNS1 PGM5P4-201ENST00000421970 445 ntBASIC19.73■□□□□ 0.75
PTCHD3Q3KNS1 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
PTCHD3Q3KNS1 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC19.73■□□□□ 0.75
PTCHD3Q3KNS1 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC19.73■□□□□ 0.75
PTCHD3Q3KNS1 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC19.73■□□□□ 0.75
PTCHD3Q3KNS1 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
PTCHD3Q3KNS1 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
PTCHD3Q3KNS1 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
PTCHD3Q3KNS1 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
PTCHD3Q3KNS1 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
PTCHD3Q3KNS1 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC19.73■□□□□ 0.75
PTCHD3Q3KNS1 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
PTCHD3Q3KNS1 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
PTCHD3Q3KNS1 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
PTCHD3Q3KNS1 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
PTCHD3Q3KNS1 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
PTCHD3Q3KNS1 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC19.72■□□□□ 0.75
PTCHD3Q3KNS1 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
PTCHD3Q3KNS1 AL356652.1-201ENST00000615962 565 ntBASIC19.72■□□□□ 0.75
PTCHD3Q3KNS1 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
PTCHD3Q3KNS1 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC19.72■□□□□ 0.75
PTCHD3Q3KNS1 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC19.72■□□□□ 0.75
PTCHD3Q3KNS1 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
PTCHD3Q3KNS1 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
PTCHD3Q3KNS1 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC19.72■□□□□ 0.75
PTCHD3Q3KNS1 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
PTCHD3Q3KNS1 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
PTCHD3Q3KNS1 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
PTCHD3Q3KNS1 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
PTCHD3Q3KNS1 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC19.71■□□□□ 0.75
PTCHD3Q3KNS1 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 48.1 ms