Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
PRKDCP78527 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
PRKDCP78527 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
PRKDCP78527 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
PRKDCP78527 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC14.8□□□□□ -0.04
PRKDCP78527 TSPY5P-201ENST00000426936 936 ntBASIC14.8□□□□□ -0.04
PRKDCP78527 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC14.8□□□□□ -0.04
PRKDCP78527 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC14.8□□□□□ -0.04
PRKDCP78527 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC14.8□□□□□ -0.04
PRKDCP78527 AC011558.1-201ENST00000623459 338 ntBASIC14.8□□□□□ -0.04
PRKDCP78527 AC010542.4-201ENST00000563151 1910 ntBASIC14.8□□□□□ -0.04
PRKDCP78527 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
PRKDCP78527 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
PRKDCP78527 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
PRKDCP78527 AC116050.2-201ENST00000612102 1779 ntBASIC14.79□□□□□ -0.04
PRKDCP78527 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC14.79□□□□□ -0.04
PRKDCP78527 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC14.79□□□□□ -0.04
PRKDCP78527 AC069148.1-201ENST00000608741 768 ntBASIC14.79□□□□□ -0.04
PRKDCP78527 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC14.79□□□□□ -0.04
PRKDCP78527 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
PRKDCP78527 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC14.79□□□□□ -0.04
PRKDCP78527 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC14.79□□□□□ -0.04
PRKDCP78527 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC14.79□□□□□ -0.04
PRKDCP78527 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC14.79□□□□□ -0.04
PRKDCP78527 EGLN1P1-201ENST00000531623 762 ntBASIC14.79□□□□□ -0.04
PRKDCP78527 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
PRKDCP78527 DGCR10-201ENST00000609839 495 ntBASIC14.79□□□□□ -0.04
PRKDCP78527 AC008622.2-201ENST00000617006 1229 ntBASIC14.79□□□□□ -0.04
PRKDCP78527 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC14.79□□□□□ -0.04
PRKDCP78527 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
PRKDCP78527 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
PRKDCP78527 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC14.79□□□□□ -0.04
PRKDCP78527 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
PRKDCP78527 AC093323.1-202ENST00000635031 2045 ntBASIC14.79□□□□□ -0.04
PRKDCP78527 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
PRKDCP78527 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC14.79□□□□□ -0.04
PRKDCP78527 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
PRKDCP78527 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC14.78□□□□□ -0.04
PRKDCP78527 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC14.78□□□□□ -0.04
PRKDCP78527 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC14.78□□□□□ -0.04
PRKDCP78527 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC14.78□□□□□ -0.04
PRKDCP78527 ABBA01031674.1-201ENST00000635145 728 ntBASIC14.78□□□□□ -0.04
PRKDCP78527 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
PRKDCP78527 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC14.78□□□□□ -0.04
PRKDCP78527 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC14.78□□□□□ -0.04
PRKDCP78527 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
PRKDCP78527 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
PRKDCP78527 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC14.78□□□□□ -0.04
PRKDCP78527 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC14.78□□□□□ -0.04
PRKDCP78527 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
PRKDCP78527 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC14.78□□□□□ -0.04
PRKDCP78527 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
PRKDCP78527 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
PRKDCP78527 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
PRKDCP78527 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC14.78□□□□□ -0.04
PRKDCP78527 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC14.78□□□□□ -0.04
PRKDCP78527 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC14.78□□□□□ -0.04
PRKDCP78527 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
PRKDCP78527 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
PRKDCP78527 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
PRKDCP78527 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC14.77□□□□□ -0.04
PRKDCP78527 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
PRKDCP78527 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC14.77□□□□□ -0.04
PRKDCP78527 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
PRKDCP78527 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
PRKDCP78527 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
PRKDCP78527 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC14.77□□□□□ -0.04
PRKDCP78527 AC092647.4-201ENST00000457211 535 ntBASIC14.77□□□□□ -0.04
PRKDCP78527 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC14.77□□□□□ -0.04
PRKDCP78527 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC14.77□□□□□ -0.04
PRKDCP78527 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC14.77□□□□□ -0.04
PRKDCP78527 GPX4-207ENST00000589115 812 ntTSL 2 BASIC14.77□□□□□ -0.04
PRKDCP78527 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
PRKDCP78527 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC14.77□□□□□ -0.04
PRKDCP78527 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC14.77□□□□□ -0.04
PRKDCP78527 AL121829.2-201ENST00000620908 328 ntBASIC14.77□□□□□ -0.05
PRKDCP78527 CR392000.1-201ENST00000624770 1228 ntBASIC14.77□□□□□ -0.05
PRKDCP78527 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
PRKDCP78527 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
PRKDCP78527 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
PRKDCP78527 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
PRKDCP78527 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
PRKDCP78527 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC14.77□□□□□ -0.05
PRKDCP78527 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
PRKDCP78527 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
PRKDCP78527 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
PRKDCP78527 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
PRKDCP78527 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
PRKDCP78527 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC14.76□□□□□ -0.05
PRKDCP78527 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC14.76□□□□□ -0.05
PRKDCP78527 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC14.76□□□□□ -0.05
PRKDCP78527 AL445675.2-201ENST00000620291 557 ntBASIC14.76□□□□□ -0.05
PRKDCP78527 AL031985.4-201ENST00000642138 673 ntBASIC14.76□□□□□ -0.05
PRKDCP78527 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
PRKDCP78527 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
PRKDCP78527 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
PRKDCP78527 C2orf69P3-201ENST00000565542 1120 ntBASIC14.76□□□□□ -0.05
PRKDCP78527 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC14.76□□□□□ -0.05
PRKDCP78527 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
PRKDCP78527 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC14.76□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 18 ms