Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
PTPN4P29074 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC20.24■□□□□ 0.83
PTPN4P29074 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC20.23■□□□□ 0.83
PTPN4P29074 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
PTPN4P29074 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC20.23■□□□□ 0.83
PTPN4P29074 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
PTPN4P29074 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
PTPN4P29074 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
PTPN4P29074 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
PTPN4P29074 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
PTPN4P29074 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
PTPN4P29074 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
PTPN4P29074 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC20.23■□□□□ 0.83
PTPN4P29074 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
PTPN4P29074 AC104771.1-201ENST00000603335 964 ntBASIC20.23■□□□□ 0.83
PTPN4P29074 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC20.23■□□□□ 0.83
PTPN4P29074 PXK-203ENST00000383715 1756 ntTSL 5 BASIC20.23■□□□□ 0.83
PTPN4P29074 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
PTPN4P29074 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
PTPN4P29074 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
PTPN4P29074 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC20.23■□□□□ 0.83
PTPN4P29074 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC20.22■□□□□ 0.83
PTPN4P29074 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
PTPN4P29074 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC20.22■□□□□ 0.83
PTPN4P29074 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC20.22■□□□□ 0.83
PTPN4P29074 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
PTPN4P29074 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC20.22■□□□□ 0.83
PTPN4P29074 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
PTPN4P29074 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC20.22■□□□□ 0.83
PTPN4P29074 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
PTPN4P29074 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC20.22■□□□□ 0.83
PTPN4P29074 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
PTPN4P29074 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
PTPN4P29074 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC20.22■□□□□ 0.83
PTPN4P29074 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
PTPN4P29074 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
PTPN4P29074 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
PTPN4P29074 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC20.22■□□□□ 0.83
PTPN4P29074 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
PTPN4P29074 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
PTPN4P29074 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC20.22■□□□□ 0.83
PTPN4P29074 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
PTPN4P29074 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
PTPN4P29074 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
PTPN4P29074 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
PTPN4P29074 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
PTPN4P29074 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
PTPN4P29074 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC20.21■□□□□ 0.83
PTPN4P29074 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC20.21■□□□□ 0.83
PTPN4P29074 EMC9-206ENST00000560403 872 ntTSL 2 BASIC20.21■□□□□ 0.83
PTPN4P29074 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC20.21■□□□□ 0.83
PTPN4P29074 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
PTPN4P29074 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC20.21■□□□□ 0.83
PTPN4P29074 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC20.21■□□□□ 0.83
PTPN4P29074 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
PTPN4P29074 BID-203ENST00000399765 1879 ntTSL 2 BASIC20.21■□□□□ 0.83
PTPN4P29074 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
PTPN4P29074 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
PTPN4P29074 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC20.21■□□□□ 0.83
PTPN4P29074 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
PTPN4P29074 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
PTPN4P29074 MFF-207ENST00000409565 1548 ntTSL 2 BASIC20.21■□□□□ 0.83
PTPN4P29074 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
PTPN4P29074 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC20.21■□□□□ 0.83
PTPN4P29074 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
PTPN4P29074 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC20.2■□□□□ 0.82
PTPN4P29074 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
PTPN4P29074 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
PTPN4P29074 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
PTPN4P29074 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
PTPN4P29074 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
PTPN4P29074 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
PTPN4P29074 NCF1B-203ENST00000435988 1254 ntBASIC20.2■□□□□ 0.82
PTPN4P29074 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC20.2■□□□□ 0.82
PTPN4P29074 MFSD11-216ENST00000590393 1141 ntBASIC20.2■□□□□ 0.82
PTPN4P29074 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC20.2■□□□□ 0.82
PTPN4P29074 AL109923.1-201ENST00000618799 583 ntBASIC20.2■□□□□ 0.82
PTPN4P29074 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
PTPN4P29074 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC20.2■□□□□ 0.82
PTPN4P29074 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
PTPN4P29074 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
PTPN4P29074 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
PTPN4P29074 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
PTPN4P29074 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
PTPN4P29074 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
PTPN4P29074 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
PTPN4P29074 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
PTPN4P29074 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC20.19■□□□□ 0.82
PTPN4P29074 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
PTPN4P29074 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
PTPN4P29074 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC20.19■□□□□ 0.82
PTPN4P29074 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
PTPN4P29074 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
PTPN4P29074 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
PTPN4P29074 MIR663A-201ENST00000385250 93 ntBASIC20.19■□□□□ 0.82
PTPN4P29074 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
PTPN4P29074 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC20.19■□□□□ 0.82
PTPN4P29074 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC20.19■□□□□ 0.82
PTPN4P29074 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC20.19■□□□□ 0.82
PTPN4P29074 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC20.19■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 58.5 ms