Protein–RNA interactions for Protein: P02549

SPTA1, Spectrin alpha chain, erythrocytic 1, humanhuman

Predictions only

Length 2,419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPTA1P02549 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.39■□□□□ 0.53
SPTA1P02549 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC18.39■□□□□ 0.53
SPTA1P02549 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC18.39■□□□□ 0.53
SPTA1P02549 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC18.39■□□□□ 0.53
SPTA1P02549 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
SPTA1P02549 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC18.39■□□□□ 0.53
SPTA1P02549 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC18.39■□□□□ 0.53
SPTA1P02549 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
SPTA1P02549 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
SPTA1P02549 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
SPTA1P02549 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC18.39■□□□□ 0.53
SPTA1P02549 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
SPTA1P02549 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC18.39■□□□□ 0.53
SPTA1P02549 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
SPTA1P02549 AC027702.1-201ENST00000563810 1770 ntBASIC18.39■□□□□ 0.53
SPTA1P02549 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SPTA1P02549 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SPTA1P02549 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
SPTA1P02549 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC18.39■□□□□ 0.53
SPTA1P02549 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC18.39■□□□□ 0.53
SPTA1P02549 AC004263.2-201ENST00000617183 678 ntBASIC18.39■□□□□ 0.53
SPTA1P02549 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
SPTA1P02549 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SPTA1P02549 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC18.38■□□□□ 0.53
SPTA1P02549 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SPTA1P02549 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
SPTA1P02549 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
SPTA1P02549 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC18.38■□□□□ 0.53
SPTA1P02549 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC18.38■□□□□ 0.53
SPTA1P02549 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC18.38■□□□□ 0.53
SPTA1P02549 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC18.38■□□□□ 0.53
SPTA1P02549 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
SPTA1P02549 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
SPTA1P02549 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC18.38■□□□□ 0.53
SPTA1P02549 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC18.38■□□□□ 0.53
SPTA1P02549 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
SPTA1P02549 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SPTA1P02549 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC18.38■□□□□ 0.53
SPTA1P02549 NMU-205ENST00000511469 756 ntTSL 3 BASIC18.38■□□□□ 0.53
SPTA1P02549 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC18.38■□□□□ 0.53
SPTA1P02549 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC18.38■□□□□ 0.53
SPTA1P02549 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
SPTA1P02549 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
SPTA1P02549 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SPTA1P02549 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC18.37■□□□□ 0.53
SPTA1P02549 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
SPTA1P02549 KSR1P1-201ENST00000446298 240 ntBASIC18.37■□□□□ 0.53
SPTA1P02549 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC18.37■□□□□ 0.53
SPTA1P02549 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC18.37■□□□□ 0.53
SPTA1P02549 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SPTA1P02549 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC18.37■□□□□ 0.53
SPTA1P02549 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC18.37■□□□□ 0.53
SPTA1P02549 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SPTA1P02549 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SPTA1P02549 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC18.37■□□□□ 0.53
SPTA1P02549 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
SPTA1P02549 EXOC3-AS1-202ENST00000623673 1663 ntBASIC18.37■□□□□ 0.53
SPTA1P02549 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
SPTA1P02549 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC18.37■□□□□ 0.53
SPTA1P02549 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SPTA1P02549 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SPTA1P02549 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC18.37■□□□□ 0.53
SPTA1P02549 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC18.37■□□□□ 0.53
SPTA1P02549 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC18.37■□□□□ 0.53
SPTA1P02549 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC18.37■□□□□ 0.53
SPTA1P02549 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SPTA1P02549 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
SPTA1P02549 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC18.36■□□□□ 0.53
SPTA1P02549 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
SPTA1P02549 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SPTA1P02549 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
SPTA1P02549 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SPTA1P02549 GUK1-204ENST00000366721 689 ntTSL 3 BASIC18.36■□□□□ 0.53
SPTA1P02549 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC18.36■□□□□ 0.53
SPTA1P02549 AL390719.1-204ENST00000412397 1219 ntBASIC18.36■□□□□ 0.53
SPTA1P02549 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC18.36■□□□□ 0.53
SPTA1P02549 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC18.36■□□□□ 0.53
SPTA1P02549 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC18.36■□□□□ 0.53
SPTA1P02549 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC18.36■□□□□ 0.53
SPTA1P02549 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SPTA1P02549 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
SPTA1P02549 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
SPTA1P02549 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC18.36■□□□□ 0.53
SPTA1P02549 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
SPTA1P02549 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
SPTA1P02549 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
SPTA1P02549 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
SPTA1P02549 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC18.36■□□□□ 0.53
SPTA1P02549 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
SPTA1P02549 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
SPTA1P02549 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC18.36■□□□□ 0.53
SPTA1P02549 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SPTA1P02549 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
SPTA1P02549 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC18.35■□□□□ 0.53
SPTA1P02549 LINC01238-205ENST00000567549 1107 ntBASIC18.35■□□□□ 0.53
SPTA1P02549 AL356652.1-201ENST00000615962 565 ntBASIC18.35■□□□□ 0.53
SPTA1P02549 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC18.35■□□□□ 0.53
SPTA1P02549 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC18.35■□□□□ 0.53
SPTA1P02549 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
SPTA1P02549 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 19.5 ms