Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
LMX1BO60663 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
LMX1BO60663 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
LMX1BO60663 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
LMX1BO60663 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC17.75■□□□□ 0.43
LMX1BO60663 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
LMX1BO60663 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC17.75■□□□□ 0.43
LMX1BO60663 AC245052.3-201ENST00000450182 901 ntBASIC17.75■□□□□ 0.43
LMX1BO60663 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
LMX1BO60663 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC17.75■□□□□ 0.43
LMX1BO60663 KLF13-207ENST00000560473 489 ntTSL 3 BASIC17.75■□□□□ 0.43
LMX1BO60663 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC17.75■□□□□ 0.43
LMX1BO60663 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
LMX1BO60663 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
LMX1BO60663 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC17.75■□□□□ 0.43
LMX1BO60663 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
LMX1BO60663 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC17.75■□□□□ 0.43
LMX1BO60663 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
LMX1BO60663 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC17.75■□□□□ 0.43
LMX1BO60663 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC17.75■□□□□ 0.43
LMX1BO60663 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC17.75■□□□□ 0.43
LMX1BO60663 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
LMX1BO60663 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
LMX1BO60663 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC17.74■□□□□ 0.43
LMX1BO60663 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
LMX1BO60663 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
LMX1BO60663 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
LMX1BO60663 FAM201B-201ENST00000458407 597 ntBASIC17.74■□□□□ 0.43
LMX1BO60663 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC17.74■□□□□ 0.43
LMX1BO60663 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
LMX1BO60663 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
LMX1BO60663 AL138781.1-201ENST00000566567 1274 ntBASIC17.74■□□□□ 0.43
LMX1BO60663 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC17.74■□□□□ 0.43
LMX1BO60663 MYCNOS-205ENST00000641950 531 ntBASIC17.74■□□□□ 0.43
LMX1BO60663 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC17.74■□□□□ 0.43
LMX1BO60663 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
LMX1BO60663 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC17.74■□□□□ 0.43
LMX1BO60663 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
LMX1BO60663 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
LMX1BO60663 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
LMX1BO60663 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
LMX1BO60663 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
LMX1BO60663 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC17.73■□□□□ 0.43
LMX1BO60663 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
LMX1BO60663 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
LMX1BO60663 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
LMX1BO60663 GUSBP6-202ENST00000438529 1198 ntBASIC17.73■□□□□ 0.43
LMX1BO60663 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC17.73■□□□□ 0.43
LMX1BO60663 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC17.73■□□□□ 0.43
LMX1BO60663 AP001160.3-201ENST00000601484 763 ntBASIC17.73■□□□□ 0.43
LMX1BO60663 AC133041.1-202ENST00000642053 222 ntBASIC17.73■□□□□ 0.43
LMX1BO60663 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
LMX1BO60663 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
LMX1BO60663 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
LMX1BO60663 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
LMX1BO60663 SMG8-203ENST00000578922 2178 ntBASIC17.73■□□□□ 0.43
LMX1BO60663 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC17.72■□□□□ 0.43
LMX1BO60663 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
LMX1BO60663 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
LMX1BO60663 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
LMX1BO60663 AC007952.6-201ENST00000573168 2673 ntBASIC17.72■□□□□ 0.43
LMX1BO60663 AC003957.1-201ENST00000625108 2673 ntBASIC17.72■□□□□ 0.43
LMX1BO60663 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
LMX1BO60663 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
LMX1BO60663 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC17.72■□□□□ 0.43
LMX1BO60663 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC17.72■□□□□ 0.43
LMX1BO60663 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
LMX1BO60663 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
LMX1BO60663 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC17.72■□□□□ 0.43
LMX1BO60663 AF201337.1-201ENST00000520239 748 ntBASIC17.72■□□□□ 0.43
LMX1BO60663 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC17.72■□□□□ 0.43
LMX1BO60663 BRI3-207ENST00000539286 699 ntTSL 2 BASIC17.72■□□□□ 0.43
LMX1BO60663 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC17.72■□□□□ 0.43
LMX1BO60663 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC17.72■□□□□ 0.43
LMX1BO60663 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
LMX1BO60663 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC17.72■□□□□ 0.43
LMX1BO60663 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
LMX1BO60663 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
LMX1BO60663 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC17.72■□□□□ 0.43
LMX1BO60663 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
LMX1BO60663 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
LMX1BO60663 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
LMX1BO60663 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
LMX1BO60663 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
LMX1BO60663 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
LMX1BO60663 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
LMX1BO60663 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
LMX1BO60663 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
LMX1BO60663 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
LMX1BO60663 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
LMX1BO60663 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
LMX1BO60663 PTPA-214ENST00000423100 988 ntTSL 2 BASIC17.71■□□□□ 0.43
LMX1BO60663 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
LMX1BO60663 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
LMX1BO60663 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC17.71■□□□□ 0.43
LMX1BO60663 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC17.71■□□□□ 0.43
LMX1BO60663 MIR2861-201ENST00000636310 90 ntBASIC17.71■□□□□ 0.43
LMX1BO60663 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
LMX1BO60663 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
LMX1BO60663 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 34.6 ms