Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CBX4O00257 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
CBX4O00257 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
CBX4O00257 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CBX4O00257 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
CBX4O00257 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC20.67■□□□□ 0.9
CBX4O00257 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC20.67■□□□□ 0.9
CBX4O00257 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
CBX4O00257 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CBX4O00257 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC20.66■□□□□ 0.9
CBX4O00257 RPS2P52-201ENST00000469610 820 ntBASIC20.66■□□□□ 0.9
CBX4O00257 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
CBX4O00257 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC20.66■□□□□ 0.9
CBX4O00257 HLA-B-256ENST00000639848 1089 ntBASIC20.66■□□□□ 0.9
CBX4O00257 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CBX4O00257 AC092368.3-202ENST00000574180 1591 ntBASIC20.66■□□□□ 0.9
CBX4O00257 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CBX4O00257 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CBX4O00257 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CBX4O00257 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC20.66■□□□□ 0.9
CBX4O00257 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
CBX4O00257 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CBX4O00257 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CBX4O00257 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC20.65■□□□□ 0.9
CBX4O00257 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CBX4O00257 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CBX4O00257 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CBX4O00257 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC20.65■□□□□ 0.9
CBX4O00257 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CBX4O00257 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC20.65■□□□□ 0.9
CBX4O00257 AC060766.5-201ENST00000590539 871 ntBASIC20.65■□□□□ 0.9
CBX4O00257 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
CBX4O00257 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
CBX4O00257 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CBX4O00257 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CBX4O00257 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
CBX4O00257 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
CBX4O00257 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
CBX4O00257 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.9
CBX4O00257 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
CBX4O00257 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
CBX4O00257 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.9
CBX4O00257 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC20.64■□□□□ 0.9
CBX4O00257 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.9
CBX4O00257 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CBX4O00257 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CBX4O00257 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CBX4O00257 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CBX4O00257 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CBX4O00257 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
CBX4O00257 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CBX4O00257 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC20.64■□□□□ 0.89
CBX4O00257 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC20.64■□□□□ 0.89
CBX4O00257 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC20.64■□□□□ 0.89
CBX4O00257 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CBX4O00257 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC20.64■□□□□ 0.89
CBX4O00257 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CBX4O00257 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
CBX4O00257 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CBX4O00257 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
CBX4O00257 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CBX4O00257 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
CBX4O00257 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
CBX4O00257 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
CBX4O00257 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC20.63■□□□□ 0.89
CBX4O00257 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC20.63■□□□□ 0.89
CBX4O00257 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
CBX4O00257 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CBX4O00257 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CBX4O00257 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC20.62■□□□□ 0.89
CBX4O00257 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CBX4O00257 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
CBX4O00257 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC20.62■□□□□ 0.89
CBX4O00257 GAS7-202ENST00000396115 929 ntTSL 5 BASIC20.62■□□□□ 0.89
CBX4O00257 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC20.62■□□□□ 0.89
CBX4O00257 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
CBX4O00257 SERP1-205ENST00000487153 657 ntTSL 4 BASIC20.62■□□□□ 0.89
CBX4O00257 PNMA6B-201ENST00000538162 1200 ntBASIC20.62■□□□□ 0.89
CBX4O00257 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CBX4O00257 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CBX4O00257 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC20.62■□□□□ 0.89
CBX4O00257 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CBX4O00257 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CBX4O00257 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
CBX4O00257 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC20.62■□□□□ 0.89
CBX4O00257 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
CBX4O00257 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC20.62■□□□□ 0.89
CBX4O00257 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CBX4O00257 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
CBX4O00257 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CBX4O00257 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
CBX4O00257 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CBX4O00257 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CBX4O00257 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CBX4O00257 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CBX4O00257 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC20.61■□□□□ 0.89
CBX4O00257 AC098590.1-201ENST00000468126 897 ntBASIC20.61■□□□□ 0.89
CBX4O00257 UNC93B5-201ENST00000530315 699 ntBASIC20.61■□□□□ 0.89
CBX4O00257 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
CBX4O00257 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 21 ms