Protein–RNA interactions for Protein: O00151

PDLIM1, PDZ and LIM domain protein 1, humanhuman

Predictions only

Length 329 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1O00151 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC19.19■□□□□ 0.66
PDLIM1O00151 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
PDLIM1O00151 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
PDLIM1O00151 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
PDLIM1O00151 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
PDLIM1O00151 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
PDLIM1O00151 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC19.18■□□□□ 0.66
PDLIM1O00151 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
PDLIM1O00151 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC19.18■□□□□ 0.66
PDLIM1O00151 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
PDLIM1O00151 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
PDLIM1O00151 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
PDLIM1O00151 LHPP-203ENST00000392757 840 ntTSL 3 BASIC19.18■□□□□ 0.66
PDLIM1O00151 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
PDLIM1O00151 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC19.18■□□□□ 0.66
PDLIM1O00151 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC19.18■□□□□ 0.66
PDLIM1O00151 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
PDLIM1O00151 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
PDLIM1O00151 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
PDLIM1O00151 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
PDLIM1O00151 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
PDLIM1O00151 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC19.18■□□□□ 0.66
PDLIM1O00151 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
PDLIM1O00151 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
PDLIM1O00151 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
PDLIM1O00151 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC19.18■□□□□ 0.66
PDLIM1O00151 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PDLIM1O00151 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC19.17■□□□□ 0.66
PDLIM1O00151 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
PDLIM1O00151 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC19.17■□□□□ 0.66
PDLIM1O00151 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC19.17■□□□□ 0.66
PDLIM1O00151 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC19.17■□□□□ 0.66
PDLIM1O00151 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
PDLIM1O00151 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PDLIM1O00151 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PDLIM1O00151 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC19.17■□□□□ 0.66
PDLIM1O00151 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
PDLIM1O00151 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC19.17■□□□□ 0.66
PDLIM1O00151 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC19.17■□□□□ 0.66
PDLIM1O00151 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
PDLIM1O00151 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PDLIM1O00151 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
PDLIM1O00151 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC19.17■□□□□ 0.66
PDLIM1O00151 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC19.17■□□□□ 0.66
PDLIM1O00151 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PDLIM1O00151 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC19.17■□□□□ 0.66
PDLIM1O00151 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
PDLIM1O00151 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC19.17■□□□□ 0.66
PDLIM1O00151 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
PDLIM1O00151 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
PDLIM1O00151 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PDLIM1O00151 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC19.16■□□□□ 0.66
PDLIM1O00151 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
PDLIM1O00151 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
PDLIM1O00151 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
PDLIM1O00151 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
PDLIM1O00151 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
PDLIM1O00151 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
PDLIM1O00151 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC19.16■□□□□ 0.66
PDLIM1O00151 JTB-203ENST00000368589 1216 ntTSL 2 BASIC19.16■□□□□ 0.66
PDLIM1O00151 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
PDLIM1O00151 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
PDLIM1O00151 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC19.16■□□□□ 0.66
PDLIM1O00151 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC19.16■□□□□ 0.66
PDLIM1O00151 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
PDLIM1O00151 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
PDLIM1O00151 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
PDLIM1O00151 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
PDLIM1O00151 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC19.16■□□□□ 0.66
PDLIM1O00151 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC19.16■□□□□ 0.66
PDLIM1O00151 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
PDLIM1O00151 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC19.16■□□□□ 0.66
PDLIM1O00151 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
PDLIM1O00151 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
PDLIM1O00151 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
PDLIM1O00151 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
PDLIM1O00151 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
PDLIM1O00151 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC19.15■□□□□ 0.66
PDLIM1O00151 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC19.15■□□□□ 0.66
PDLIM1O00151 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
PDLIM1O00151 AL358852.1-201ENST00000623174 1268 ntBASIC19.15■□□□□ 0.66
PDLIM1O00151 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
PDLIM1O00151 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
PDLIM1O00151 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
PDLIM1O00151 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
PDLIM1O00151 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
PDLIM1O00151 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC19.14■□□□□ 0.66
PDLIM1O00151 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
PDLIM1O00151 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
PDLIM1O00151 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC19.14■□□□□ 0.65
PDLIM1O00151 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
PDLIM1O00151 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC19.14■□□□□ 0.65
PDLIM1O00151 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC19.14■□□□□ 0.65
PDLIM1O00151 AC012414.1-201ENST00000556676 535 ntBASIC19.14■□□□□ 0.65
PDLIM1O00151 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC19.14■□□□□ 0.65
PDLIM1O00151 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC19.14■□□□□ 0.65
PDLIM1O00151 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC19.14■□□□□ 0.65
PDLIM1O00151 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC19.14■□□□□ 0.65
PDLIM1O00151 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
PDLIM1O00151 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 54 ms