Protein–RNA interactions for Protein: A6NM62

LRRC53, Leucine-rich repeat-containing protein 53, humanhuman

Predictions only

Length 1,247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC53A6NM62 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC21.8■■□□□ 1.08
LRRC53A6NM62 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC21.8■■□□□ 1.08
LRRC53A6NM62 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC21.8■■□□□ 1.08
LRRC53A6NM62 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
LRRC53A6NM62 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
LRRC53A6NM62 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
LRRC53A6NM62 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
LRRC53A6NM62 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC21.79■■□□□ 1.08
LRRC53A6NM62 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC21.79■■□□□ 1.08
LRRC53A6NM62 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
LRRC53A6NM62 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC21.79■■□□□ 1.08
LRRC53A6NM62 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC21.79■■□□□ 1.08
LRRC53A6NM62 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC21.79■■□□□ 1.08
LRRC53A6NM62 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC21.79■■□□□ 1.08
LRRC53A6NM62 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
LRRC53A6NM62 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
LRRC53A6NM62 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC21.79■■□□□ 1.08
LRRC53A6NM62 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
LRRC53A6NM62 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
LRRC53A6NM62 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
LRRC53A6NM62 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
LRRC53A6NM62 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC21.78■■□□□ 1.08
LRRC53A6NM62 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC21.78■■□□□ 1.08
LRRC53A6NM62 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC21.78■■□□□ 1.08
LRRC53A6NM62 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC21.78■■□□□ 1.08
LRRC53A6NM62 HACD1-201ENST00000326961 773 ntTSL 2 BASIC21.78■■□□□ 1.08
LRRC53A6NM62 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
LRRC53A6NM62 UQCRFS1P1-201ENST00000435169 820 ntBASIC21.78■■□□□ 1.08
LRRC53A6NM62 VMO1-204ENST00000441199 741 ntTSL 2 BASIC21.78■■□□□ 1.08
LRRC53A6NM62 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
LRRC53A6NM62 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC21.78■■□□□ 1.08
LRRC53A6NM62 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
LRRC53A6NM62 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
LRRC53A6NM62 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
LRRC53A6NM62 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC21.78■■□□□ 1.08
LRRC53A6NM62 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
LRRC53A6NM62 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
LRRC53A6NM62 AL158211.5-201ENST00000623583 2518 ntBASIC21.77■■□□□ 1.08
LRRC53A6NM62 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.08
LRRC53A6NM62 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
LRRC53A6NM62 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC21.77■■□□□ 1.08
LRRC53A6NM62 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC21.77■■□□□ 1.08
LRRC53A6NM62 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC21.77■■□□□ 1.08
LRRC53A6NM62 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC21.77■■□□□ 1.08
LRRC53A6NM62 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC21.77■■□□□ 1.08
LRRC53A6NM62 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
LRRC53A6NM62 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
LRRC53A6NM62 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
LRRC53A6NM62 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
LRRC53A6NM62 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.08
LRRC53A6NM62 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
LRRC53A6NM62 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.08
LRRC53A6NM62 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
LRRC53A6NM62 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC21.77■■□□□ 1.08
LRRC53A6NM62 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC21.77■■□□□ 1.08
LRRC53A6NM62 BX119927.1-201ENST00000636596 1552 ntBASIC21.77■■□□□ 1.08
LRRC53A6NM62 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC21.77■■□□□ 1.08
LRRC53A6NM62 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.08
LRRC53A6NM62 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC21.77■■□□□ 1.07
LRRC53A6NM62 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
LRRC53A6NM62 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC21.77■■□□□ 1.07
LRRC53A6NM62 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC21.77■■□□□ 1.07
LRRC53A6NM62 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.07
LRRC53A6NM62 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC21.77■■□□□ 1.07
LRRC53A6NM62 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
LRRC53A6NM62 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
LRRC53A6NM62 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
LRRC53A6NM62 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
LRRC53A6NM62 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
LRRC53A6NM62 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC21.76■■□□□ 1.07
LRRC53A6NM62 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
LRRC53A6NM62 AC097381.1-201ENST00000429019 1296 ntBASIC21.76■■□□□ 1.07
LRRC53A6NM62 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC21.76■■□□□ 1.07
LRRC53A6NM62 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC21.76■■□□□ 1.07
LRRC53A6NM62 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC21.76■■□□□ 1.07
LRRC53A6NM62 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC21.76■■□□□ 1.07
LRRC53A6NM62 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
LRRC53A6NM62 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC21.76■■□□□ 1.07
LRRC53A6NM62 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
LRRC53A6NM62 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
LRRC53A6NM62 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
LRRC53A6NM62 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC21.76■■□□□ 1.07
LRRC53A6NM62 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC21.76■■□□□ 1.07
LRRC53A6NM62 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC21.76■■□□□ 1.07
LRRC53A6NM62 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC21.76■■□□□ 1.07
LRRC53A6NM62 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
LRRC53A6NM62 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC21.75■■□□□ 1.07
LRRC53A6NM62 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC21.75■■□□□ 1.07
LRRC53A6NM62 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC21.75■■□□□ 1.07
LRRC53A6NM62 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC21.75■■□□□ 1.07
LRRC53A6NM62 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC21.75■■□□□ 1.07
LRRC53A6NM62 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
LRRC53A6NM62 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC21.75■■□□□ 1.07
LRRC53A6NM62 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC21.75■■□□□ 1.07
LRRC53A6NM62 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
LRRC53A6NM62 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC21.75■■□□□ 1.07
LRRC53A6NM62 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC21.75■■□□□ 1.07
LRRC53A6NM62 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
LRRC53A6NM62 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
LRRC53A6NM62 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 23 ms