Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC19.23■□□□□ 0.67
SCN3AQ9NY46 STK25-205ENST00000405883 1904 ntTSL 2 BASIC19.23■□□□□ 0.67
SCN3AQ9NY46 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
SCN3AQ9NY46 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SCN3AQ9NY46 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC19.23■□□□□ 0.67
SCN3AQ9NY46 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC19.23■□□□□ 0.67
SCN3AQ9NY46 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC19.23■□□□□ 0.67
SCN3AQ9NY46 AC133041.1-202ENST00000642053 222 ntBASIC19.23■□□□□ 0.67
SCN3AQ9NY46 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SCN3AQ9NY46 PTBP1P-201ENST00000554374 1601 ntBASIC19.23■□□□□ 0.67
SCN3AQ9NY46 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
SCN3AQ9NY46 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
SCN3AQ9NY46 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC19.23■□□□□ 0.67
SCN3AQ9NY46 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SCN3AQ9NY46 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SCN3AQ9NY46 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC19.22■□□□□ 0.67
SCN3AQ9NY46 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
SCN3AQ9NY46 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SCN3AQ9NY46 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
SCN3AQ9NY46 AL589743.5-201ENST00000616611 1050 ntBASIC19.22■□□□□ 0.67
SCN3AQ9NY46 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
SCN3AQ9NY46 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
SCN3AQ9NY46 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
SCN3AQ9NY46 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC19.22■□□□□ 0.67
SCN3AQ9NY46 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC19.22■□□□□ 0.67
SCN3AQ9NY46 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
SCN3AQ9NY46 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
SCN3AQ9NY46 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SCN3AQ9NY46 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC19.22■□□□□ 0.67
SCN3AQ9NY46 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC19.22■□□□□ 0.67
SCN3AQ9NY46 SERP1-205ENST00000487153 657 ntTSL 4 BASIC19.22■□□□□ 0.67
SCN3AQ9NY46 AC092118.2-201ENST00000613495 667 ntBASIC19.22■□□□□ 0.67
SCN3AQ9NY46 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SCN3AQ9NY46 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC19.22■□□□□ 0.67
SCN3AQ9NY46 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC19.21■□□□□ 0.67
SCN3AQ9NY46 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SCN3AQ9NY46 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SCN3AQ9NY46 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC19.21■□□□□ 0.67
SCN3AQ9NY46 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SCN3AQ9NY46 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC19.21■□□□□ 0.67
SCN3AQ9NY46 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC19.21■□□□□ 0.67
SCN3AQ9NY46 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
SCN3AQ9NY46 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SCN3AQ9NY46 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SCN3AQ9NY46 FEM1AP1-201ENST00000431297 1995 ntBASIC19.21■□□□□ 0.67
SCN3AQ9NY46 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SCN3AQ9NY46 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC19.21■□□□□ 0.67
SCN3AQ9NY46 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SCN3AQ9NY46 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
SCN3AQ9NY46 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC19.21■□□□□ 0.67
SCN3AQ9NY46 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC19.21■□□□□ 0.67
SCN3AQ9NY46 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC19.21■□□□□ 0.67
SCN3AQ9NY46 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SCN3AQ9NY46 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SCN3AQ9NY46 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SCN3AQ9NY46 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
SCN3AQ9NY46 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SCN3AQ9NY46 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SCN3AQ9NY46 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
SCN3AQ9NY46 UNC93B5-201ENST00000530315 699 ntBASIC19.2■□□□□ 0.66
SCN3AQ9NY46 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC19.2■□□□□ 0.66
SCN3AQ9NY46 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC19.2■□□□□ 0.66
SCN3AQ9NY46 TBCB-214ENST00000629269 413 ntTSL 5 BASIC19.2■□□□□ 0.66
SCN3AQ9NY46 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SCN3AQ9NY46 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
SCN3AQ9NY46 MOK-233ENST00000524214 1539 ntTSL 2 BASIC19.2■□□□□ 0.66
SCN3AQ9NY46 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC19.2■□□□□ 0.66
SCN3AQ9NY46 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SCN3AQ9NY46 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SCN3AQ9NY46 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SCN3AQ9NY46 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC19.2■□□□□ 0.66
SCN3AQ9NY46 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC19.2■□□□□ 0.66
SCN3AQ9NY46 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
SCN3AQ9NY46 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
SCN3AQ9NY46 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC19.2■□□□□ 0.66
SCN3AQ9NY46 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SCN3AQ9NY46 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SCN3AQ9NY46 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SCN3AQ9NY46 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
SCN3AQ9NY46 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC19.19■□□□□ 0.66
SCN3AQ9NY46 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SCN3AQ9NY46 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SCN3AQ9NY46 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SCN3AQ9NY46 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC19.19■□□□□ 0.66
SCN3AQ9NY46 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
SCN3AQ9NY46 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC19.19■□□□□ 0.66
SCN3AQ9NY46 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC19.19■□□□□ 0.66
SCN3AQ9NY46 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
SCN3AQ9NY46 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SCN3AQ9NY46 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC19.19■□□□□ 0.66
SCN3AQ9NY46 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SCN3AQ9NY46 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
SCN3AQ9NY46 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
SCN3AQ9NY46 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
SCN3AQ9NY46 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC19.18■□□□□ 0.66
SCN3AQ9NY46 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC19.18■□□□□ 0.66
SCN3AQ9NY46 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC19.18■□□□□ 0.66
SCN3AQ9NY46 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SCN3AQ9NY46 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SCN3AQ9NY46 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms