Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
PCDH9Q9HC56 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
PCDH9Q9HC56 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
PCDH9Q9HC56 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
PCDH9Q9HC56 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
PCDH9Q9HC56 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC20.93■□□□□ 0.94
PCDH9Q9HC56 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
PCDH9Q9HC56 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC20.93■□□□□ 0.94
PCDH9Q9HC56 DUX4L16-201ENST00000555130 1264 ntBASIC20.93■□□□□ 0.94
PCDH9Q9HC56 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
PCDH9Q9HC56 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC20.93■□□□□ 0.94
PCDH9Q9HC56 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
PCDH9Q9HC56 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC20.93■□□□□ 0.94
PCDH9Q9HC56 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
PCDH9Q9HC56 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
PCDH9Q9HC56 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
PCDH9Q9HC56 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
PCDH9Q9HC56 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC20.92■□□□□ 0.94
PCDH9Q9HC56 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
PCDH9Q9HC56 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
PCDH9Q9HC56 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
PCDH9Q9HC56 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC20.92■□□□□ 0.94
PCDH9Q9HC56 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC20.92■□□□□ 0.94
PCDH9Q9HC56 BMP1-204ENST00000397814 836 ntTSL 4 BASIC20.92■□□□□ 0.94
PCDH9Q9HC56 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC20.92■□□□□ 0.94
PCDH9Q9HC56 UQCRFS1P1-201ENST00000435169 820 ntBASIC20.92■□□□□ 0.94
PCDH9Q9HC56 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
PCDH9Q9HC56 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
PCDH9Q9HC56 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
PCDH9Q9HC56 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
PCDH9Q9HC56 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
PCDH9Q9HC56 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
PCDH9Q9HC56 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
PCDH9Q9HC56 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
PCDH9Q9HC56 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
PCDH9Q9HC56 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
PCDH9Q9HC56 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
PCDH9Q9HC56 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
PCDH9Q9HC56 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC20.92■□□□□ 0.94
PCDH9Q9HC56 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC20.92■□□□□ 0.94
PCDH9Q9HC56 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
PCDH9Q9HC56 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
PCDH9Q9HC56 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC20.91■□□□□ 0.94
PCDH9Q9HC56 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
PCDH9Q9HC56 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC20.91■□□□□ 0.94
PCDH9Q9HC56 AC091799.1-201ENST00000422823 811 ntBASIC20.91■□□□□ 0.94
PCDH9Q9HC56 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC20.91■□□□□ 0.94
PCDH9Q9HC56 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
PCDH9Q9HC56 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC20.91■□□□□ 0.94
PCDH9Q9HC56 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC20.91■□□□□ 0.94
PCDH9Q9HC56 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC20.91■□□□□ 0.94
PCDH9Q9HC56 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
PCDH9Q9HC56 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC20.9■□□□□ 0.94
PCDH9Q9HC56 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
PCDH9Q9HC56 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
PCDH9Q9HC56 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
PCDH9Q9HC56 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
PCDH9Q9HC56 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
PCDH9Q9HC56 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
PCDH9Q9HC56 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
PCDH9Q9HC56 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC20.9■□□□□ 0.94
PCDH9Q9HC56 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC20.9■□□□□ 0.94
PCDH9Q9HC56 AC080038.1-201ENST00000611274 1154 ntBASIC20.9■□□□□ 0.94
PCDH9Q9HC56 AC013268.1-206ENST00000638368 961 ntBASIC20.9■□□□□ 0.94
PCDH9Q9HC56 AC112229.1-201ENST00000639295 961 ntBASIC20.9■□□□□ 0.94
PCDH9Q9HC56 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC20.9■□□□□ 0.94
PCDH9Q9HC56 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
PCDH9Q9HC56 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
PCDH9Q9HC56 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC20.9■□□□□ 0.94
PCDH9Q9HC56 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
PCDH9Q9HC56 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
PCDH9Q9HC56 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.94
PCDH9Q9HC56 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
PCDH9Q9HC56 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.93
PCDH9Q9HC56 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC20.89■□□□□ 0.93
PCDH9Q9HC56 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC20.89■□□□□ 0.93
PCDH9Q9HC56 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC20.89■□□□□ 0.93
PCDH9Q9HC56 DLX3-202ENST00000512495 834 ntTSL 2 BASIC20.89■□□□□ 0.93
PCDH9Q9HC56 CD44-222ENST00000526025 1052 ntTSL 2 BASIC20.89■□□□□ 0.93
PCDH9Q9HC56 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
PCDH9Q9HC56 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC20.89■□□□□ 0.93
PCDH9Q9HC56 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
PCDH9Q9HC56 SMG8-203ENST00000578922 2178 ntBASIC20.89■□□□□ 0.93
PCDH9Q9HC56 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
PCDH9Q9HC56 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.93
PCDH9Q9HC56 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
PCDH9Q9HC56 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC20.88■□□□□ 0.93
PCDH9Q9HC56 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC20.88■□□□□ 0.93
PCDH9Q9HC56 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC20.88■□□□□ 0.93
PCDH9Q9HC56 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
PCDH9Q9HC56 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
PCDH9Q9HC56 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
PCDH9Q9HC56 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
PCDH9Q9HC56 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
PCDH9Q9HC56 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
PCDH9Q9HC56 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
PCDH9Q9HC56 METTL26-203ENST00000397664 604 ntTSL 2 BASIC20.88■□□□□ 0.93
PCDH9Q9HC56 AC007322.4-201ENST00000509611 723 ntBASIC20.88■□□□□ 0.93
PCDH9Q9HC56 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC20.88■□□□□ 0.93
PCDH9Q9HC56 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC20.88■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 20.7 ms