Protein–RNA interactions for Protein: Q9HBJ7

USP29, Ubiquitin carboxyl-terminal hydrolase 29, humanhuman

Predictions only

Length 922 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP29Q9HBJ7 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
USP29Q9HBJ7 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC20.88■□□□□ 0.93
USP29Q9HBJ7 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC20.88■□□□□ 0.93
USP29Q9HBJ7 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
USP29Q9HBJ7 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC20.88■□□□□ 0.93
USP29Q9HBJ7 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC20.88■□□□□ 0.93
USP29Q9HBJ7 ABHD17AP1-201ENST00000358206 933 ntBASIC20.88■□□□□ 0.93
USP29Q9HBJ7 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
USP29Q9HBJ7 TSPY6P-201ENST00000448518 926 ntBASIC20.88■□□□□ 0.93
USP29Q9HBJ7 AC083906.2-201ENST00000511578 360 ntBASIC20.88■□□□□ 0.93
USP29Q9HBJ7 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC20.88■□□□□ 0.93
USP29Q9HBJ7 OAS3-207ENST00000551007 998 ntTSL 2 BASIC20.88■□□□□ 0.93
USP29Q9HBJ7 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC20.88■□□□□ 0.93
USP29Q9HBJ7 MAZ-216ENST00000616501 991 ntTSL 5 BASIC20.88■□□□□ 0.93
USP29Q9HBJ7 AC010536.3-201ENST00000620306 533 ntBASIC20.88■□□□□ 0.93
USP29Q9HBJ7 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC20.88■□□□□ 0.93
USP29Q9HBJ7 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
USP29Q9HBJ7 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC20.88■□□□□ 0.93
USP29Q9HBJ7 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
USP29Q9HBJ7 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
USP29Q9HBJ7 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
USP29Q9HBJ7 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC20.88■□□□□ 0.93
USP29Q9HBJ7 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
USP29Q9HBJ7 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC20.87■□□□□ 0.93
USP29Q9HBJ7 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC20.87■□□□□ 0.93
USP29Q9HBJ7 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
USP29Q9HBJ7 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
USP29Q9HBJ7 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
USP29Q9HBJ7 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
USP29Q9HBJ7 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
USP29Q9HBJ7 VMO1-204ENST00000441199 741 ntTSL 2 BASIC20.87■□□□□ 0.93
USP29Q9HBJ7 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC20.87■□□□□ 0.93
USP29Q9HBJ7 BRI3-207ENST00000539286 699 ntTSL 2 BASIC20.87■□□□□ 0.93
USP29Q9HBJ7 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC20.87■□□□□ 0.93
USP29Q9HBJ7 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC20.87■□□□□ 0.93
USP29Q9HBJ7 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC20.87■□□□□ 0.93
USP29Q9HBJ7 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
USP29Q9HBJ7 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
USP29Q9HBJ7 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
USP29Q9HBJ7 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC20.86■□□□□ 0.93
USP29Q9HBJ7 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
USP29Q9HBJ7 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC20.86■□□□□ 0.93
USP29Q9HBJ7 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
USP29Q9HBJ7 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
USP29Q9HBJ7 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
USP29Q9HBJ7 CDV3P1-201ENST00000471403 739 ntBASIC20.86■□□□□ 0.93
USP29Q9HBJ7 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
USP29Q9HBJ7 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC20.86■□□□□ 0.93
USP29Q9HBJ7 AL050303.2-201ENST00000619798 666 ntBASIC20.86■□□□□ 0.93
USP29Q9HBJ7 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC20.86■□□□□ 0.93
USP29Q9HBJ7 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
USP29Q9HBJ7 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC20.86■□□□□ 0.93
USP29Q9HBJ7 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
USP29Q9HBJ7 SMG8-203ENST00000578922 2178 ntBASIC20.86■□□□□ 0.93
USP29Q9HBJ7 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
USP29Q9HBJ7 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
USP29Q9HBJ7 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC20.86■□□□□ 0.93
USP29Q9HBJ7 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
USP29Q9HBJ7 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
USP29Q9HBJ7 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
USP29Q9HBJ7 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
USP29Q9HBJ7 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
USP29Q9HBJ7 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
USP29Q9HBJ7 SLC29A4P1-201ENST00000398760 971 ntBASIC20.85■□□□□ 0.93
USP29Q9HBJ7 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
USP29Q9HBJ7 CD99P1-205ENST00000527459 561 ntBASIC20.85■□□□□ 0.93
USP29Q9HBJ7 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC20.85■□□□□ 0.93
USP29Q9HBJ7 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC20.85■□□□□ 0.93
USP29Q9HBJ7 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
USP29Q9HBJ7 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
USP29Q9HBJ7 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
USP29Q9HBJ7 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC20.85■□□□□ 0.93
USP29Q9HBJ7 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
USP29Q9HBJ7 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
USP29Q9HBJ7 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC20.84■□□□□ 0.93
USP29Q9HBJ7 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC20.84■□□□□ 0.93
USP29Q9HBJ7 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC20.84■□□□□ 0.93
USP29Q9HBJ7 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
USP29Q9HBJ7 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
USP29Q9HBJ7 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC20.84■□□□□ 0.93
USP29Q9HBJ7 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
USP29Q9HBJ7 AL591742.1-201ENST00000604433 565 ntBASIC20.84■□□□□ 0.93
USP29Q9HBJ7 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
USP29Q9HBJ7 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC20.84■□□□□ 0.93
USP29Q9HBJ7 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
USP29Q9HBJ7 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
USP29Q9HBJ7 AFG3L1P-217ENST00000557444 2447 ntBASIC20.84■□□□□ 0.93
USP29Q9HBJ7 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC20.84■□□□□ 0.93
USP29Q9HBJ7 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
USP29Q9HBJ7 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
USP29Q9HBJ7 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
USP29Q9HBJ7 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC20.83■□□□□ 0.93
USP29Q9HBJ7 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.93
USP29Q9HBJ7 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC20.83■□□□□ 0.93
USP29Q9HBJ7 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC20.83■□□□□ 0.93
USP29Q9HBJ7 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
USP29Q9HBJ7 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC20.83■□□□□ 0.93
USP29Q9HBJ7 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC20.83■□□□□ 0.93
USP29Q9HBJ7 APTR-205ENST00000447009 902 ntTSL 2 BASIC20.83■□□□□ 0.93
USP29Q9HBJ7 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC20.83■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms