Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
MMP28Q9H239 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
MMP28Q9H239 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
MMP28Q9H239 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
MMP28Q9H239 AC093503.3-201ENST00000624917 2352 ntBASIC17.81■□□□□ 0.44
MMP28Q9H239 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
MMP28Q9H239 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
MMP28Q9H239 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
MMP28Q9H239 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
MMP28Q9H239 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
MMP28Q9H239 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC17.8■□□□□ 0.44
MMP28Q9H239 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
MMP28Q9H239 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC17.8■□□□□ 0.44
MMP28Q9H239 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
MMP28Q9H239 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
MMP28Q9H239 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
MMP28Q9H239 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
MMP28Q9H239 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
MMP28Q9H239 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC17.8■□□□□ 0.44
MMP28Q9H239 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
MMP28Q9H239 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC17.8■□□□□ 0.44
MMP28Q9H239 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
MMP28Q9H239 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC17.8■□□□□ 0.44
MMP28Q9H239 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC17.8■□□□□ 0.44
MMP28Q9H239 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
MMP28Q9H239 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
MMP28Q9H239 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
MMP28Q9H239 BX842568.3-201ENST00000418104 571 ntBASIC17.8■□□□□ 0.44
MMP28Q9H239 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC17.8■□□□□ 0.44
MMP28Q9H239 AC087239.1-201ENST00000622671 572 ntBASIC17.8■□□□□ 0.44
MMP28Q9H239 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
MMP28Q9H239 EI24-211ENST00000534546 1544 ntTSL 2 BASIC17.8■□□□□ 0.44
MMP28Q9H239 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
MMP28Q9H239 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
MMP28Q9H239 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
MMP28Q9H239 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
MMP28Q9H239 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
MMP28Q9H239 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
MMP28Q9H239 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC17.79■□□□□ 0.44
MMP28Q9H239 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
MMP28Q9H239 WAC-202ENST00000347934 2839 ntTSL 5 BASIC17.79■□□□□ 0.44
MMP28Q9H239 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
MMP28Q9H239 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
MMP28Q9H239 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
MMP28Q9H239 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC17.79■□□□□ 0.44
MMP28Q9H239 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC17.79■□□□□ 0.44
MMP28Q9H239 AL031432.3-201ENST00000607698 485 ntBASIC17.79■□□□□ 0.44
MMP28Q9H239 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
MMP28Q9H239 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC17.79■□□□□ 0.44
MMP28Q9H239 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
MMP28Q9H239 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
MMP28Q9H239 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC17.79■□□□□ 0.44
MMP28Q9H239 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC17.79■□□□□ 0.44
MMP28Q9H239 LTB4R2-202ENST00000528054 3092 ntBASIC17.79■□□□□ 0.44
MMP28Q9H239 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
MMP28Q9H239 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
MMP28Q9H239 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
MMP28Q9H239 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
MMP28Q9H239 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC17.79■□□□□ 0.44
MMP28Q9H239 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
MMP28Q9H239 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
MMP28Q9H239 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
MMP28Q9H239 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
MMP28Q9H239 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
MMP28Q9H239 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
MMP28Q9H239 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
MMP28Q9H239 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
MMP28Q9H239 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
MMP28Q9H239 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC17.78■□□□□ 0.44
MMP28Q9H239 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC17.78■□□□□ 0.44
MMP28Q9H239 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
MMP28Q9H239 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
MMP28Q9H239 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
MMP28Q9H239 EDA-201ENST00000338901 1233 ntBASIC17.78■□□□□ 0.44
MMP28Q9H239 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
MMP28Q9H239 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
MMP28Q9H239 SUDS3P1-201ENST00000505831 966 ntBASIC17.78■□□□□ 0.44
MMP28Q9H239 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC17.78■□□□□ 0.44
MMP28Q9H239 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
MMP28Q9H239 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
MMP28Q9H239 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
MMP28Q9H239 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC17.78■□□□□ 0.44
MMP28Q9H239 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC17.77■□□□□ 0.44
MMP28Q9H239 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
MMP28Q9H239 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC17.77■□□□□ 0.44
MMP28Q9H239 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC17.77■□□□□ 0.44
MMP28Q9H239 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
MMP28Q9H239 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC17.77■□□□□ 0.44
MMP28Q9H239 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
MMP28Q9H239 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC17.77■□□□□ 0.44
MMP28Q9H239 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC17.77■□□□□ 0.44
MMP28Q9H239 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
MMP28Q9H239 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
MMP28Q9H239 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC17.77■□□□□ 0.44
MMP28Q9H239 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC17.77■□□□□ 0.44
MMP28Q9H239 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
MMP28Q9H239 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
MMP28Q9H239 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC17.77■□□□□ 0.44
MMP28Q9H239 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC17.77■□□□□ 0.44
MMP28Q9H239 AP005435.1-201ENST00000529293 1178 ntBASIC17.77■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms