Protein–RNA interactions for Protein: Q9C037

TRIM4, E3 ubiquitin-protein ligase TRIM4, humanhuman

Predictions only

Length 500 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM4Q9C037 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.81
TRIM4Q9C037 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC20.08■□□□□ 0.81
TRIM4Q9C037 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
TRIM4Q9C037 FEM1AP4-201ENST00000443167 1987 ntBASIC20.08■□□□□ 0.81
TRIM4Q9C037 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
TRIM4Q9C037 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC20.08■□□□□ 0.81
TRIM4Q9C037 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
TRIM4Q9C037 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC20.08■□□□□ 0.81
TRIM4Q9C037 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC20.08■□□□□ 0.81
TRIM4Q9C037 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
TRIM4Q9C037 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
TRIM4Q9C037 KRT18P29-201ENST00000397031 1267 ntBASIC20.08■□□□□ 0.81
TRIM4Q9C037 KRT18P11-201ENST00000435214 1283 ntBASIC20.08■□□□□ 0.81
TRIM4Q9C037 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC20.08■□□□□ 0.81
TRIM4Q9C037 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
TRIM4Q9C037 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC20.08■□□□□ 0.8
TRIM4Q9C037 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC20.07■□□□□ 0.8
TRIM4Q9C037 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
TRIM4Q9C037 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
TRIM4Q9C037 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC20.07■□□□□ 0.8
TRIM4Q9C037 AP004607.7-201ENST00000527152 1677 ntBASIC20.07■□□□□ 0.8
TRIM4Q9C037 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
TRIM4Q9C037 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC20.07■□□□□ 0.8
TRIM4Q9C037 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
TRIM4Q9C037 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
TRIM4Q9C037 SLC29A4P1-201ENST00000398760 971 ntBASIC20.07■□□□□ 0.8
TRIM4Q9C037 SMUG1P1-201ENST00000590640 811 ntBASIC20.07■□□□□ 0.8
TRIM4Q9C037 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC20.07■□□□□ 0.8
TRIM4Q9C037 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
TRIM4Q9C037 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
TRIM4Q9C037 AC003102.1-202ENST00000563394 1796 ntBASIC20.07■□□□□ 0.8
TRIM4Q9C037 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC20.07■□□□□ 0.8
TRIM4Q9C037 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
TRIM4Q9C037 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
TRIM4Q9C037 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC20.06■□□□□ 0.8
TRIM4Q9C037 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC20.06■□□□□ 0.8
TRIM4Q9C037 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC20.06■□□□□ 0.8
TRIM4Q9C037 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
TRIM4Q9C037 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC20.06■□□□□ 0.8
TRIM4Q9C037 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
TRIM4Q9C037 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
TRIM4Q9C037 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
TRIM4Q9C037 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
TRIM4Q9C037 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
TRIM4Q9C037 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
TRIM4Q9C037 RGMA-211ENST00000557420 989 ntTSL 3 BASIC20.06■□□□□ 0.8
TRIM4Q9C037 TFG-210ENST00000620299 1289 ntTSL 5 BASIC20.06■□□□□ 0.8
TRIM4Q9C037 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
TRIM4Q9C037 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
TRIM4Q9C037 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC20.06■□□□□ 0.8
TRIM4Q9C037 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC20.06■□□□□ 0.8
TRIM4Q9C037 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC20.05■□□□□ 0.8
TRIM4Q9C037 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC20.05■□□□□ 0.8
TRIM4Q9C037 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
TRIM4Q9C037 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC20.05■□□□□ 0.8
TRIM4Q9C037 AL158211.5-201ENST00000623583 2518 ntBASIC20.05■□□□□ 0.8
TRIM4Q9C037 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
TRIM4Q9C037 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
TRIM4Q9C037 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
TRIM4Q9C037 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC20.05■□□□□ 0.8
TRIM4Q9C037 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC20.05■□□□□ 0.8
TRIM4Q9C037 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC20.05■□□□□ 0.8
TRIM4Q9C037 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC20.05■□□□□ 0.8
TRIM4Q9C037 TESC-206ENST00000541210 936 ntTSL 3 BASIC20.05■□□□□ 0.8
TRIM4Q9C037 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC20.05■□□□□ 0.8
TRIM4Q9C037 SLC7A5P2-201ENST00000553010 536 ntBASIC20.05■□□□□ 0.8
TRIM4Q9C037 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC20.05■□□□□ 0.8
TRIM4Q9C037 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC20.05■□□□□ 0.8
TRIM4Q9C037 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
TRIM4Q9C037 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
TRIM4Q9C037 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC20.05■□□□□ 0.8
TRIM4Q9C037 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC20.05■□□□□ 0.8
TRIM4Q9C037 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC20.05■□□□□ 0.8
TRIM4Q9C037 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
TRIM4Q9C037 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC20.05■□□□□ 0.8
TRIM4Q9C037 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC20.04■□□□□ 0.8
TRIM4Q9C037 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC20.04■□□□□ 0.8
TRIM4Q9C037 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC20.04■□□□□ 0.8
TRIM4Q9C037 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC20.04■□□□□ 0.8
TRIM4Q9C037 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
TRIM4Q9C037 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
TRIM4Q9C037 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
TRIM4Q9C037 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
TRIM4Q9C037 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
TRIM4Q9C037 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
TRIM4Q9C037 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
TRIM4Q9C037 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
TRIM4Q9C037 POU5F1P3-201ENST00000428824 1078 ntBASIC20.04■□□□□ 0.8
TRIM4Q9C037 RPS2P52-201ENST00000469610 820 ntBASIC20.04■□□□□ 0.8
TRIM4Q9C037 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC20.04■□□□□ 0.8
TRIM4Q9C037 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC20.04■□□□□ 0.8
TRIM4Q9C037 MFSD11-216ENST00000590393 1141 ntBASIC20.04■□□□□ 0.8
TRIM4Q9C037 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
TRIM4Q9C037 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
TRIM4Q9C037 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
TRIM4Q9C037 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
TRIM4Q9C037 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
TRIM4Q9C037 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
TRIM4Q9C037 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
TRIM4Q9C037 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 22 ms