Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
TRIM56Q9BRZ2 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
TRIM56Q9BRZ2 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC20.61■□□□□ 0.89
TRIM56Q9BRZ2 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC20.61■□□□□ 0.89
TRIM56Q9BRZ2 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC20.61■□□□□ 0.89
TRIM56Q9BRZ2 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
TRIM56Q9BRZ2 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
TRIM56Q9BRZ2 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
TRIM56Q9BRZ2 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC20.61■□□□□ 0.89
TRIM56Q9BRZ2 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
TRIM56Q9BRZ2 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
TRIM56Q9BRZ2 UBE2DNL-204ENST00000602536 740 ntBASIC20.61■□□□□ 0.89
TRIM56Q9BRZ2 MIR2861-201ENST00000636310 90 ntBASIC20.61■□□□□ 0.89
TRIM56Q9BRZ2 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
TRIM56Q9BRZ2 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
TRIM56Q9BRZ2 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
TRIM56Q9BRZ2 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
TRIM56Q9BRZ2 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
TRIM56Q9BRZ2 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
TRIM56Q9BRZ2 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC20.61■□□□□ 0.89
TRIM56Q9BRZ2 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC20.61■□□□□ 0.89
TRIM56Q9BRZ2 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
TRIM56Q9BRZ2 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
TRIM56Q9BRZ2 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC20.6■□□□□ 0.89
TRIM56Q9BRZ2 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
TRIM56Q9BRZ2 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC20.6■□□□□ 0.89
TRIM56Q9BRZ2 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
TRIM56Q9BRZ2 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
TRIM56Q9BRZ2 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC20.6■□□□□ 0.89
TRIM56Q9BRZ2 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
TRIM56Q9BRZ2 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
TRIM56Q9BRZ2 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
TRIM56Q9BRZ2 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
TRIM56Q9BRZ2 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
TRIM56Q9BRZ2 PARL-206ENST00000435888 1098 ntTSL 5 BASIC20.6■□□□□ 0.89
TRIM56Q9BRZ2 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC20.6■□□□□ 0.89
TRIM56Q9BRZ2 GALNS-213ENST00000569433 723 ntTSL 3 BASIC20.6■□□□□ 0.89
TRIM56Q9BRZ2 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
TRIM56Q9BRZ2 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
TRIM56Q9BRZ2 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
TRIM56Q9BRZ2 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
TRIM56Q9BRZ2 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
TRIM56Q9BRZ2 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
TRIM56Q9BRZ2 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC20.6■□□□□ 0.89
TRIM56Q9BRZ2 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC20.6■□□□□ 0.89
TRIM56Q9BRZ2 RNF165-205ENST00000588679 2904 ntBASIC20.6■□□□□ 0.89
TRIM56Q9BRZ2 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
TRIM56Q9BRZ2 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
TRIM56Q9BRZ2 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC20.59■□□□□ 0.89
TRIM56Q9BRZ2 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC20.59■□□□□ 0.89
TRIM56Q9BRZ2 BID-204ENST00000399767 2129 ntTSL 2 BASIC20.59■□□□□ 0.89
TRIM56Q9BRZ2 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
TRIM56Q9BRZ2 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
TRIM56Q9BRZ2 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
TRIM56Q9BRZ2 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC20.59■□□□□ 0.89
TRIM56Q9BRZ2 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
TRIM56Q9BRZ2 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
TRIM56Q9BRZ2 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
TRIM56Q9BRZ2 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC20.59■□□□□ 0.89
TRIM56Q9BRZ2 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC20.59■□□□□ 0.89
TRIM56Q9BRZ2 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
TRIM56Q9BRZ2 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC20.59■□□□□ 0.89
TRIM56Q9BRZ2 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC20.59■□□□□ 0.89
TRIM56Q9BRZ2 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
TRIM56Q9BRZ2 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
TRIM56Q9BRZ2 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC20.59■□□□□ 0.89
TRIM56Q9BRZ2 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
TRIM56Q9BRZ2 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
TRIM56Q9BRZ2 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.89
TRIM56Q9BRZ2 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC20.58■□□□□ 0.89
TRIM56Q9BRZ2 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC20.58■□□□□ 0.89
TRIM56Q9BRZ2 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
TRIM56Q9BRZ2 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
TRIM56Q9BRZ2 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
TRIM56Q9BRZ2 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
TRIM56Q9BRZ2 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC20.58■□□□□ 0.89
TRIM56Q9BRZ2 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC20.58■□□□□ 0.89
TRIM56Q9BRZ2 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.89
TRIM56Q9BRZ2 AL162430.1-201ENST00000480705 870 ntBASIC20.58■□□□□ 0.89
TRIM56Q9BRZ2 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
TRIM56Q9BRZ2 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
TRIM56Q9BRZ2 KRT18P20-201ENST00000548986 1279 ntBASIC20.58■□□□□ 0.89
TRIM56Q9BRZ2 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC20.58■□□□□ 0.89
TRIM56Q9BRZ2 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC20.58■□□□□ 0.88
TRIM56Q9BRZ2 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC20.58■□□□□ 0.88
TRIM56Q9BRZ2 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
TRIM56Q9BRZ2 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
TRIM56Q9BRZ2 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
TRIM56Q9BRZ2 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
TRIM56Q9BRZ2 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
TRIM56Q9BRZ2 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
TRIM56Q9BRZ2 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
TRIM56Q9BRZ2 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
TRIM56Q9BRZ2 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
TRIM56Q9BRZ2 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
TRIM56Q9BRZ2 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
TRIM56Q9BRZ2 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
TRIM56Q9BRZ2 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
TRIM56Q9BRZ2 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
TRIM56Q9BRZ2 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 40.6 ms